G76570


Basic Information

Item Value
gene id G76570
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 3592818 ~ 3595411 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU90910
TGAAAACTGTGGGTTCTTTTGTTTCTCactcaggttttattttttccatccaCGTATTATTACAGGAAGTGACACAAAAGGTCACAGAGAGTCTGAGAGTCAGCTCGGAGAGTTTTACATCGATCTCCAATCCTGGTGTCAACACTTCAGACAGAAACAGTCGTGGAACGCGGTTCAGTCACGACGCCTTGGTCTGATTCGGATTCGGCGAGTCTTACATGAGAAGATGGggtgattttttaattttttatcttttttagtCCTGTCTGAATCCTGTATTTTAATTTCTACACAATGTAGAAATAATCGCTGATGATATCTAAAACCCCGTCTGAATAAACACGCTGTAAAAGACTCCATTACATCACGGAGGAAAAGAGGTTCTGCGCTTTTTCTTCAGAATAAATACAGGAAGCACGTCTTTCTTTCGTCTCCTGTCCAAACCAGAACGAAACGCGGCAGCGGCcgagtttaaaatgcagaacgACAAACAGCCGTTTAAGAGCCTGTttacatgttatggtcatgtgacctacgaATCATCAAACACTCACACGCTCAAAGCAATCGGCTTTGTGTTAGAATGAGGTGAACGTAATACACGTGGACCTTAACaactctcctctctgtccctctcatTATAGAGCGATCGCTCATCCTGCGTGAAGCGCTCGGTTACTGAAAACGTCCTCcggtaacaacacacacacacacacacacacacacacacgtccgtCCAGAAATCATATCCCATCCAAACGGTACTCCAGTCAGACTAATATTAGACTGCTGGTGTAGAGACAAACCTATTCCCAGGGTTAATGGTGACCTTATAAACCATTCTCAACGCATCAGCTGTACGATAATCACGCAGCTCACCTCGTGTCTAAAACCCAGAACAAACCGTgagcagataataataataataataattacaataataacaataataataataaaaaaggtatAGGTGTCATCAGGAAACGCTTGGCGGACTTGTAGCGCATCCCGTGTTCAGGTTTTCATCAGACGCATTTCCCAACACGTCTCAGTTTTCGGAAGCACGCGTTAAACCCGAACGCACGGTCTGACCTCGCCGTAATCGTGCTCTGTTACAGGAGACACGCAGGAAGCGTATTTCGACCTGTTACACAAGCTTCagcacacgtacacacactgctccaaaCGCGTCTGTTCTGCGACACGCCGTAACGTATCTCCAGGTTTAGACACTTTCACATCCTGGATCAAGTTACCGTGACGTCAGAATCTGTTTCACAACACTACGTTGTGATGCGAAGCTCCTCCGGTGTGATGGTGACGCGCTTATTTCCCCACAGCACATACTCAACTAACACAAGCACTTTAAAATAGTTCGGCAAAAACTAATTTACCAGTTTAGACTTCTGTGACTAATACACgctcatttaaataaacagcttgTAAACTTATTCAGTATATAATTATGTATCACACTGGACTTTACACGGCTATAAACTCACACAGGAGGGAAAATCAgacttaaacacaaacactgaggcGGTAAAGAATGCCATTTTcactggaaaaataaacaaacaaacaaacaaataaataaataaaaatatttgtgatttaaaaataaaataaataaacactttttacaGCAGAAAGTTCCCTAACAGGAAGTGACGTTATACAGAAAATAGTCGACATTTTATAATGACAGTGTGTTTCAGACTCCGAGTCACtgtttgtgtaaataattttagaTAAGAAGTGTAAATGAGGCTGTGTACTTCAGGACTGAAAAAGGGTTAAAGCTGGATTTAAACTGCAAGCAGCACGCAGTCCATAGCAACAAcatcaacataaacataaacaacataaacataaacaacaacaacaacaccatcatcatcatcatcatcatcatcatcctcctgtCACAGTTTTACACCAGACTCCTTCATCTACACGCCgtttatttagttaattagttatttatttattcatgtccCTGGCTGACCGCGCTCAAACCACTTCCCCTGGCTAATGCTAATCATCacgagagacacacacacacacacacgcacacacacacacacacacacacacacggagtctAACAACAAACTTAAACATTTTCATCACATTTCAGCGCTTTAAACACTCCGCCATTTTACACCCGTCTGGTCTGGCAGCCATTATCGCGAacaaaacccaaacacacagcaggagCAGAGCTAACGCTAGCTcgaagctaagctaagctaggCTAGGCTATGCTAGCGCTATGCTAAGCTAGCTCTAGGCTAGGCTATGCTATGCTAGCTCTATGCTAGGCTAGGCTAGGCTAAGCTCCGGGCTCTGTAAAGGCACACGTCAACGCAATGTGCTCCGTGAGCGAGGCGAGAGCTCGAGCAGCCCGGGATCTTCCCCATTACAGCTCCGGATTTATcggttttttaaaaataaattataaatacagGAGCGCTGGCTACGCGCGGATACGGCGCCCGGGTCCATGTTGTGGGagtgtgtgaaaacaaaatcgcgggtttttttt

Function

NR:

description
PREDICTED: clathrin heavy chain 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90910 True 2548 lncRNA 0.43 2 3592818 3595411

Neighbor

gene id symbol gene type direction distance location
tmeff2a tmeff2,tmeff2a,LOC107670719,LOC107728299 coding downstream 532581 2968680 ~ 3060237 (-)
cavin2a sdpr coding downstream 632452 2944274 ~ 2960366 (-)
nabp1a nabp1,nabp2,LOC107718374,LOC106575791,LOC108255000 coding downstream 639017 2928821 ~ 2953801 (-)
trnas-cga NA coding downstream 653416 2939321 ~ 2939402 (-)
c5h2orf69 c6h2orf69 coding downstream 672811 2919306 ~ 2920007 (-)
dnah7 dnah7 coding upstream 38581 3633992 ~ 3745382 (-)
parp14rs1 LOC108266413 coding upstream 174823 3770234 ~ 3784393 (-)
gypc NA coding upstream 297069 3892480 ~ 3923274 (-)
cntnap5a LOC108266700,LOC108425961 coding upstream 408315 4003726 ~ 4126493 (-)
sfrp2 NA coding upstream 694661 4290072 ~ 4294136 (-)
G76462 NA non-coding downstream 626285 2965266 ~ 2966533 (-)
G76455 NA non-coding downstream 656255 2936081 ~ 2936563 (-)
G76400 stk17b non-coding downstream 675771 2914400 ~ 2917047 (-)
LOC117597440 NA non-coding downstream 695614 2893376 ~ 2897204 (-)
G76325 mink1,LOC108427066 non-coding downstream 1033666 2556506 ~ 2559152 (-)
G76658 NA non-coding upstream 255985 3851396 ~ 3852207 (-)
G76682 NA non-coding upstream 342383 3937794 ~ 3938000 (-)
G76688 NA non-coding upstream 372462 3967873 ~ 3968077 (-)
G76794 NA non-coding upstream 410283 4005694 ~ 4005908 (-)
G76796 NA non-coding upstream 412026 4007437 ~ 4007795 (-)
LOC113541352 c6h21orf62 other downstream 786955 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 839012 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 1528520 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 1789173 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 1918245 1674484 ~ 1674573 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 191545 3786956 ~ 3816059 (-)
G77283 NA other upstream 1244549 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 1736173 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 2643544 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 2727632 6323043 ~ 6324680 (-)

Expression


Co-expression Network