faima (faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285)


Basic Information

Item Value
gene id faima
gene name faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 3786956 ~ 3816059 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU90966
AACTGTTACTATGGTTACATGTGTTGTTAGGCAGATACCTGGTttgttgttagctagctagcttttcGGGGCTACTGAGCTAACTAGGCGAATTCTGGACAAACGAGAAAGACACCATGGACATTTGGTGCAATGGGCAGAAAATGGAGACAGCCGGGGAGTTTGTGGATGACGGCACAGAGACGCACTTCACTCTAGGCGACCATGACTGCTGCATCAAGGCCGTGAGCAGCGGGAGGAGGAGAGACGGCATCATCCACACACGCTCCTGGTGGACGGCAATGAAATGGCCGAGGCCAGCGAATGATCGTCTGTGAATCCTGTGATGTAGGAAGTTGTGGTTTTAACCCTCATGTTCTTCACTACAGTGGTTGTCCTACTGACTCAGGCCATCACTTTAGAATTTAAAGCAATACAGATGTATCATTTAGTTTAAATTCGCAGTACATTCCCAGTAATCGCAGCACTAAGAATGAGAAATGATATCAGTAGATGCAGGAAAGCACTTCCTGTATGCTGAGAGCACAGGCAAAGGGAGCTGTCATTTGTACTTCAGATTTAACACTTAAAAGTGACCTGAAAGTAATTCatgtaagaatttttttttcttttttcttaagaaACTAAGCCAAATTCATGCTGGCAACATTAGTTTTAGtgtgaagaaaatgaaaatggggaaaaatgggaGCCAAAGAGAACACAAGGGTTAAACTGATCTGGCCCTTGTACTGGTTTAACGTAACATTTCCGAATTGACCGTAAAAAAGGGCAACCTTTAGCTTTCGTGTGTTTGTGCGTTTGTAGTACGAGGGTTAGAGATTCTTATATACACTACAGtttatggccagaagtatgtgaacacctgaccattacacctaAATGTGTTTCcgtcctcaaactgttgccacaaacttggaagcacacagttgtataaaatgtctttgcatgctgtagcattacaatttcccttcactggaactaagaggctgaaacctgttccagcatgacgatgtccctgtgcacaaagcgagctccaagcgagctccatgaagacatggtgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagccctgacctcaaccccactgaacacctttgggatgaactggaacaccgactgaagcccaacatcagcgcctgatctcactaatgctcttgtagctgaatgatcacaaatccccacagccacgctccaacatctagtggaaagccttcccagaagagtggagcttattataacagcataaaggggaataaatctgaaatgagatGTTCATAAAGCACAAAGGGGTGCGATGGTGagctgtccacaaacatttggccttGTAGTGTAGGTGTGTCTCATTATTGCACCTGCTAAAGCCATGGCTTGAGTTGCCAATCATGGAACCAACTTGTAACTTTACTATATCAGACCTAATAGACCTGCTGCTAATGATCAGATTGTATTAAACCTGGCCAAAATGGTATTTCATAgatcatgtgatttttatgaGCTTTGCCATGATTcctaaaaatatattgtattatgtGCTCACCAGCAGTGAAGCAAGGAGTAGAAATGAGACTAAatcacagaaaagaaaatgagaaacttCATACATGGTTGAAACAAGCCGAGCCAGACTCGTttgactttcagttttaatagTGAAGATTTCAGGACAATAAAATGGAGCTGCTAGACTTCTGGATTGACTTACCTTCATGTGCGGTGGCATCATTGCTTACATCTCTAAAAACTGACGTGGTTAGGAACCAAATATGAAATACAAGTGTTTACACATGTGAGAACATTCCTTTAAGAACTTTTAAAGGTCCCAGCCACCATCGCGGTGGATGACAGTAACATTCCTGTGGAAGTGCACTTGGAAGTCAGTGTCATTTTATATAGAACGGCTACAGAGTATTTACAGATTTTGTACTTTCCAAATCCAGTGTTTGGCAATTCTTCCTGTTGAAACCTGCTTTAAGTGGCTCTTTATGAAAAGTTTAGGGCtcattatatattcatatgGCAGACTGTAAAGTGCCTACCTATCTCCGCTAAACTGATACAACCTTTAAAGGGTTATTAGGAATATAAAAAGGGACtgatttgtcttttctttccaaATCACGAAGACTGCAAGACTTCAACACATTTCCTGATTCCTTACAGGTAATCTGCTTAGCCCTTCACCATTGTGttgttatatttaaaagtatGTACAGTAATATCGTGATTCTAAGTGTGG
>TU90967
AACTGTTACTATGGTTACATGTGTTGTTAGGCAGATACCTGGTttgttgttagctagctagcttttcGGGGCTACTGAGCTAACTAGGCGAATTCTGGACAAACGAGGGATCATGTCCGGAGACCTGGTTGGGGTTTGGGACGTGGCCCTGAGTGATGGGGTTCACAGGATTGAATTTGAACATGGCACAACCACGGGGAAACGCGTCATCCATGTAGATGGCAAGGAGGTCCTGAGGAGAGACTGGATGTTCAAGCTGGTCGGCAAGGAGACGTTTTACGTAGGAAgcacagacacaaaggccaccATTAACATTGACGCGGTGAGTGGGTTCGCCTACGAATACACACTGGAGATCAACGGCAAGAGCCTGAAGAAATACATGGAGAACCGTTCTAAGGTGACA
>TU90968
TTCTACATTAGAATAAATGGGAGCGTAAGTGTACCTTCAGTGTGTCAGTATCCTTTGGAAAAACTacgaaaaatatttttatttttgagcctTTATAGTATTTAGAAAATTCCACTACTGCAGTGGTCATAATTTGAGAAACTTCATCTTTTCCAAGGCCAAGGTTGCCCGTCCCGAGAGCAGGAAAAGATATAGATGACCAACCTTTAGTTCTTGCCATCGTAAGGCAATTTGTGACCACCGAGTGAAGAATCTAGAAAAGACAATGTCAACATTCAAGACTTAAAACATCAGCCATGATGAAGGGCTGAATAAACTTTAGATGCTAAATCAGAGTGCTAATGAATTACTTGATGTAAACTTCTAGAATGCTTGACTGGTTATATATTAGAAATCCAACCTTATTGGCCTTATCATCAGTGGTGCTTTTTGGCACACAGACAGTGTGGTACACTGCCATACAGTTCAGTTTACAGCCAGAAGTTGGAATAATGTCACCCTCGTGAACATGTCCATGTTTAAGACGTTTTATTTCATCCTGAATCTTCCGGCCAGCTTTTTTCAGCAGAGCAGCTGAAACCTGTCCTTTTGATAAATCTAAGTTGGGTCCTATCGTGTTCACGATGACATCTgtctacaaacacaaacTGTCTCATTCTCAATGGCACCCTTTTTGAGGTGGAGAGTCACATTCCCCAGATCTAGACTGGAGACTGGAGACTGGGTTGGTGCATTGCCCTGGTTTTGCATTGGCATTAGGTCAGATGGCCCCAGAATTTCCCTGCAGGCTCTGTGCATCTGTTGAACTGATGGATCATCATTATTCACCAGACGAACTTCAAGGTTCCCGGCTTCTGGATTGCGTTTATCACTGAATGACTTCACTGTAGCTACAATGATTTCAGCACATTTTTGCAGTGGAAAATTGTAAAGCCCTGAGCTAATTGCAGGGATTGCAACAGACTGCATGTTTTCATAGTTAGCTTTTCGCAAGATACTCCAAATAGTTTTCTCTAAAAGGTCTGATGCATCCCTAAGTTCTGTCTTTGTTGCCTTTAGTGATACACAGGGTCCAACGGCGTGTATGATCATTTTACAAGGGAGATTTCCAGCTCGAGTGGCAACAGCTTCACCTGTGTGAACTTTACCCTTTTGTTTTATGATTTCATCACTCCATTGCTGAATCATACGACCTCCAGCTCGACTCAGAGCTAGAGCAAGTCCTGCTCCATGATTTAAATGCTCATTTGCTGCATTTACCACAGCATCAACCTTATGTGTAGTAAGATCATCTTTCCACACTGATACTTTCAGACTCTTAGACAGCTGTTTGCTGTACTTAATGTCAGGCACAATGGTTGCTTTGCTGTGGGAAAAGGATGAAGCTGTATGATCCTCCAAATTGTGGATCTGAGCGGTACAACCAAATTTTCCTTCTAGCCCACGGCAAAATGCAGAGCTACTGCGTTTCAGAATCTCAATCCCCTCTGGCTGCAACAGAATAAATGCCTTGCCATCTTCCA
>XM_034304686.1
agaagaagaagcggCAGAAGAAGAACTGTTACTATGGTTACATGTGTTGTTAGGCAGATACCTGGTttgttgttagctagctagcttttcGGGGCTACTGAGCTAACTAGGCGAATTCTGGACAAACGGTAACTTGGAGCACCAGTTTTGATCTCTTGGCAGAGGGATCATGTCCGGAGACCTGGTTGGGGTTTGGGACGTGGCCCTGAGTGATGGGGTTCACAGGATTGAATTTGAACATGGCACAACCACGGGGAAACGCGTCATCCATGTAGATGGCAAGGAGGTCCTGAGGAGAGACTGGATGTTCAAGCTGGTCGGCAAGGAGACGTTTTACGTAGGAAgcacagacacaaaggccaccATTAACATTGACGCGGTGAGTGGGTTCGCCTACGAATACACACTGGAGATCAACGGCAAGAGCCTGAAGAAATACATGGAGAACCGTTCTAAGGTGACATCTGAGACAAAACTTTACAACACATCAGTAAATGATTGGatgtgctctctctcttcctgaaCAGAGAAAGACACCATGGACATTTGGTGCAATGGGCAGAAAATGGAGACAGCCGGGGAGTTTGTGGATGACGGCACAGAGACGCACTTCACTCTAGGCGACCATGACTGCTGCATCAAGGCCGTGAGCAGCGGGAGGAGGAGAGACGGCATCATCCACACGCTCCTGGTGGACGGCAATGAAATGGCCGAGGCCAGCGAATGATCGTCTGTGAATCCTGTGATGTAGGAAGTTGTGGTTTTAACCCTCATGTTCTTCACTACAGTGGTTGTCCTACTGACTCAGGCCATCACTTTAGAATTTAAAGCAATACAGATGTATCATTTAGTTTAAATTCGCAGTACATTCCCAGTAATCGCAGCACTAAGAATGAGAAATGATATCAGTAGATGCAGGAAAGCACTTCCTGTATGCTGAGAGCACAGGCAAAGGGAGCTGTCATTTGTACTTCAGATTTAACACTTAAAAGTGACCTGAAAGTAATTCatgtaagaatttttttttcttttttcttaagaaACTAAGCCAAATTCATGCTGGCAACATTAGTTTTAGtgtgaagaaaatgaaaatggggaaaaatgggaGCCAAAGAGAACACAAGGGTTAAACTGATCTGGCCCTTGTACTGGTTTAACGTAACATTTCCGAATTGACCGTAAAAAAGGGCAACCTTTAGCTTTCGTGTGTTTGTGCGTTTGTAGTACGAGGGTTAGAGATTCTTATATACACTACAGtttatggccagaagtatgtgaacacctgaccattacacctaAATGTGTTTCcgtcctcaaactgttgccacaaacttggaagcacacagttgtataaaatgtctttgcatgc

Function

symbol description
faima Predicted to be involved in I-kappaB kinase/NF-kappaB signaling; negative regulation of extrinsic apoptotic signaling pathway via death domain receptors; and positive regulation of neurogenesis. Predicted to act upstream of or within negative regulation of apoptotic process. Orthologous to human FAIM (Fas apoptotic inhibitory molecule).

NR:

description
PREDICTED: fas apoptotic inhibitory molecule 1

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90966 True 2274 lncRNA 0.42 3 3809192 3816036
TU90967 False 406 TUCP 0.50 3 3813479 3816036
TU90968 False 1523 lncRNA 0.42 3 3786956 3805597
XM_034304686.1 False 1372 mRNA 0.45 6 3810514 3816059

Neighbor

gene id symbol gene type direction distance location
parp14rs1 LOC108266413 coding downstream 2563 3770234 ~ 3784393 (-)
dnah7 dnah7 coding downstream 41574 3633992 ~ 3745382 (-)
tmeff2a tmeff2,tmeff2a,LOC107670719,LOC107728299 coding downstream 726719 2968680 ~ 3060237 (-)
cavin2a sdpr coding downstream 826590 2944274 ~ 2960366 (-)
nabp1a nabp1,nabp2,LOC107718374,LOC106575791,LOC108255000 coding downstream 833155 2928821 ~ 2953801 (-)
gypc NA coding upstream 76421 3892480 ~ 3923274 (-)
cntnap5a LOC108266700,LOC108425961 coding upstream 187667 4003726 ~ 4126493 (-)
sfrp2 NA coding upstream 474013 4290072 ~ 4294136 (-)
LOC113535176 NA coding upstream 516836 4332895 ~ 4333842 (-)
tmem163a tmem163a,LOC108266155,LOC107725256,LOC108425930,LOC107658221,LOC107684456,LOC107555363 coding upstream 597984 4414043 ~ 4469641 (-)
G76570 NA non-coding downstream 191545 3592818 ~ 3595411 (-)
G76462 NA non-coding downstream 820423 2965266 ~ 2966533 (-)
G76455 NA non-coding downstream 850393 2936081 ~ 2936563 (-)
G76400 stk17b non-coding downstream 869909 2914400 ~ 2917047 (-)
LOC117597440 NA non-coding downstream 889752 2893376 ~ 2897204 (-)
G76658 NA non-coding upstream 35337 3851396 ~ 3852207 (-)
G76682 NA non-coding upstream 121735 3937794 ~ 3938000 (-)
G76688 NA non-coding upstream 151814 3967873 ~ 3968077 (-)
G76794 NA non-coding upstream 189635 4005694 ~ 4005908 (-)
G76796 NA non-coding upstream 191378 4007437 ~ 4007795 (-)
LOC113541352 c6h21orf62 other downstream 981093 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 1033150 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 1722658 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 1983311 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 2112383 1674484 ~ 1674573 (-)
G77283 NA other upstream 1023901 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 1515525 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 2422896 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 2506984 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 2712987 6529046 ~ 6615660 (-)

Expression


Co-expression Network