G77496


Basic Information

Item Value
gene id G77496
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 5330898 ~ 5331387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU92000
TACTGCTTGATTTTATGATTGTGAAATAAGGAATTTATTATTGCCATGTCGATTAATGTCCATGGTACTTGCAGTCATGCAGGGCAAACAGACATATCACCACTGGTCTGTTTTACTCCTACACACACTAGGCTGCTCAGGCCTGCTGTGTGAACAAAACAGCCTGCTGCACCAAGTAGATGATGTGCAGATGATCCCACAGTACGACAtagtgcagacagacagagtgagagagctagagagagggagatggccGGAGGGGAGGATTAGACGTACCTGTGAGAGGCCTGTCAGGTAGATTTAGCAGCAGAGATGATAAGTGAGGGAGTGAGTAGGAGGAGAAGAACAGCAATGAATGGGCTTTTCACAGTGCTTTTGGGCAGCTAGAGGAATAAGGTGCTATTTCTAACAACATCAGGATAGTCAGTCACAAAGAAGTGCAGCTGAGTTTAACAGCATGTCACATTGTtagggatgagagagagagagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92000 True 490 lncRNA 0.46 1 5330898 5331387

Neighbor

gene id symbol gene type direction distance location
acvr2aa LOC108266626,LOC108412453,LOC107709421,LOC107673126 coding downstream 172076 5115388 ~ 5158822 (-)
epc2 epc2 coding downstream 227376 5091309 ~ 5103522 (-)
ubxn4 ubxn4 coding downstream 470548 4850639 ~ 4860350 (-)
nmi nmi coding downstream 501386 4822232 ~ 4829512 (-)
LOC113535278 rnd3,LOC108266936,LOC103021440,LOC108425951,LOC103141407,LOC106582403,LOC107600972 coding downstream 553426 4768561 ~ 4777472 (-)
arhgap15 arhgap15 coding upstream 109094 5440481 ~ 5481975 (-)
LOC113534858 LOC108266244 coding upstream 894467 6225854 ~ 6243712 (-)
LOC117597339 NA coding upstream 896821 6228208 ~ 6231192 (-)
mcf2lb LOC108266232,LOC108430488 coding upstream 1076774 6408161 ~ 6431124 (-)
LOC113534875 rnf17 coding upstream 1119977 6451364 ~ 6708475 (-)
G77397 NA non-coding downstream 123867 5136933 ~ 5207031 (-)
G77353 NA non-coding downstream 187770 5112272 ~ 5143128 (-)
G77388 NA non-coding downstream 195565 5072441 ~ 5135333 (-)
G77381 NA non-coding downstream 271297 5050585 ~ 5059601 (-)
G77364 NA non-coding downstream 275423 5002709 ~ 5055475 (-)
G77511 LOC108266643,LOC108438030 non-coding upstream 48911 5380298 ~ 5382271 (-)
G77540 NA non-coding upstream 82954 5414341 ~ 5414776 (-)
G77629 NA non-coding upstream 161930 5493317 ~ 5548165 (-)
G77645 efnb2 non-coding upstream 238470 5569857 ~ 5573384 (-)
G77719 NA non-coding upstream 787544 6118931 ~ 6119138 (-)
G77283 NA other downstream 486019 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 1514839 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 2525035 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 2577092 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 3266600 2047779 ~ 2064298 (-)
LOC113534947 NA other upstream 197 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 907568 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 991656 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 1197659 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other upstream 1211046 6542433 ~ 6545953 (-)

Expression


Co-expression Network