LOC113534947


Basic Information

Item Value
gene id LOC113534947
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 5331584 ~ 5339633 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU92001
tctctctctctctctctctcatgctcacCTGTGCAGGTGAGTAGACGATGCCAAGATCTCTGATTCGCAGggagggtggaaaaaaaaacacaacaaccaAAAACTCAATCGGGGTGCACAAGCGCCATCTACGAGGGCCTGAttagacacaaaaacaaacaaacctacCGGAGTGTGTAGGAAACCTCCCGAGCAGGACTggaagggaggaaggaaaaTGCTGAGGAGAGGTTTGGAAGGCGAAGGCGAGTGCCGGACGGAGCCACAGGCGCGAGCGTGTGCACCATTCACTTCACGTGAGGGACCGTTATTCCTGATGGACAGAAAccgatttatcctggtcagggattgtggtggatctggagcctatcccaggaacactgaacaTGATGTGGAAATACCAATGggatgggatgccaatccaATACCAGGACACacgcactcattcacacctactgGCACGAGGTATTTTTGGGAGGAGGAAGGAAACGGGAAGAagcccagaagaaacccacactgacacagggagaacatgtgaaactccaca
>XR_003403549.2
aaaaTGCTGAGGAGAGGTTTGGAAGGCGAAGGCGAGTGCCGGACGGAGCCACAGGCGCGAGCGTGTGCACCATTCACTTCACGTGAGGGACCGTTATTCCTGATGGACAGGAAAAGGGAGTTAAGTGTGATGTCCTAAGTCAATGGAAGTCAGTGAGTTATTGGAAAGGAGAAGTGAGAGAGCTAGTCATCAAGAACCTGGGGAAAGGTTGACCACAATGCAACCATtcTCTCACGCCCACGTGCCCTCGgaccttgtgtgtgtatgacgcTGTCCCTGAAGAGAAGCAGGAGAATTTGACTCATAAGGAAACCTAATGTATTCAGGAAGAAACCTGATGGCACACAGCACTATTGGGAGTCTACGGCACATTGAGACATAACAGATCAGTCTCTTATTGGGCACTTAGTCCCGGCTctaaagtgttgcacagcattaaaagaagatgcaGTGGCAAATGGAATTGACTTATACAACATCTGAGCCATTGCAGCACGTCCTCCTTTTATGCAAGGTTGGTGAATTTGCAGATTGAAGGTGTTAGGGAAATAACAGACAACGCACACAGCAAGGCCTGGACCTTAATCAATCGGGTCCAGAGCGATGAGTCAAGCTGCCATCAGGCCGACGGAGAGACAGGCTGTCAGCTGAAGAGGGAAATTTACTGACATGGTGGTCTTGGGTGCTTCCTCAGGCTTGTCAAAGCTGCCCTAAGGTTTACCGATAAAGCAGGCCGGATGTACGAGTGTCATGACAAGCCTGACAAAGGCAAGGAACtctgtgttggagtgtgtatgtgtgcatgcatggtgTCCCTGAGCACCAGTGCAAAGTGCCACAGGAAATCTGCTTCCACCAGATGTACACTGAAGTGCATCAGGCTAGCTATCCTGCACCAAAAGGTAATTATTAGGGAAGAACAACAGGAATTAGATTTAGTACAGAGTACCTGGAGGTTACATATAATAGTTAGTAAGACTATTTCTGTCCTAAGTTTTTGATTCCTACCCATATCATATTTATCAGacaataacattatttaaaagttagCAATGGATATAAAAGTGGTCCATAAAGAAAAGACCACAGAGTATATTGACAAAAAACTTAATGCAGGTGTTAAAATATTGGTCTCTTAAGAGCAAATTGATGTGTTAAACATGAGTTGCAGTCAAGCTCCTCTGTCTTGTTGCGCACTCTTAATCGCTCCTCAGGAAACAGGACAGCTAATCTAGAGAAGGAAACCGAGAGGTGAGGCCTGATGGGCCTGAGAGGGAAGTCAGCAGGATGTGACTGGCCTCTGattactgtacacactcctgtcaGAACCGTCAGCACCTCCCACGCTcccctgtatgtgtgtgtggagacgcTGTATATGGCGAGGTATGAAGGTCATTATCAGAGAAACTTGCTCAAGACGGAAGCACGTTTAAGGCATGATAGCCAAACACAGTGGGTTGTATCAGCAGAGGCCAAGAGTAAAGGAATGTGACACAGTCAGTTTGACCACAGAAGCTATGTATTGCGTTAGGCTGTGTTCAGGAATACAGTGAATACAGTGCTTATTTGCTTTTAGGAAAACAGAGTGAACAGGCCATTTCACTTGCTGTAGAGTTGAAAGAGATAACCTGAAAGATGTTATGCATTTTATGCCTATATTATATTACAAGCATTATCACTGTTATTATTCTTTACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92001 False 547 TUCP 0.52 2 5331584 5339633
XR_003403549.2 True 1700 lncRNA 0.45 4 5331832 5339419

Neighbor

gene id symbol gene type direction distance location
acvr2aa LOC108266626,LOC108412453,LOC107709421,LOC107673126 coding downstream 172762 5115388 ~ 5158822 (-)
epc2 epc2 coding downstream 228062 5091309 ~ 5103522 (-)
ubxn4 ubxn4 coding downstream 471234 4850639 ~ 4860350 (-)
nmi nmi coding downstream 502072 4822232 ~ 4829512 (-)
LOC113535278 rnd3,LOC108266936,LOC103021440,LOC108425951,LOC103141407,LOC106582403,LOC107600972 coding downstream 554112 4768561 ~ 4777472 (-)
arhgap15 arhgap15 coding upstream 100848 5440481 ~ 5481975 (-)
LOC113534858 LOC108266244 coding upstream 886221 6225854 ~ 6243712 (-)
LOC117597339 NA coding upstream 888575 6228208 ~ 6231192 (-)
mcf2lb LOC108266232,LOC108430488 coding upstream 1068528 6408161 ~ 6431124 (-)
LOC113534875 rnf17 coding upstream 1111731 6451364 ~ 6708475 (-)
G77496 NA non-coding downstream 197 5330898 ~ 5331387 (-)
G77397 NA non-coding downstream 124553 5136933 ~ 5207031 (-)
G77353 NA non-coding downstream 188456 5112272 ~ 5143128 (-)
G77388 NA non-coding downstream 196251 5072441 ~ 5135333 (-)
G77381 NA non-coding downstream 271983 5050585 ~ 5059601 (-)
G77511 LOC108266643,LOC108438030 non-coding upstream 40665 5380298 ~ 5382271 (-)
G77540 NA non-coding upstream 74708 5414341 ~ 5414776 (-)
G77629 NA non-coding upstream 153684 5493317 ~ 5548165 (-)
G77645 efnb2 non-coding upstream 230224 5569857 ~ 5573384 (-)
G77719 NA non-coding upstream 779298 6118931 ~ 6119138 (-)
G77283 NA other downstream 486705 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 1515525 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 2525721 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 2577778 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 3267286 2047779 ~ 2064298 (-)
LOC117597406 LOC108266244 other upstream 899322 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 983410 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 1189413 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other upstream 1202800 6542433 ~ 6545953 (-)
G78159 NA other upstream 1704154 7043787 ~ 7046809 (-)

Expression


Co-expression Network