LOC117597406 (LOC108266244)


Basic Information

Item Value
gene id LOC117597406
gene name LOC108266244
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6238955 ~ 6253346 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU92312
TACATATACTGTAAAGTACGATTGTTGAGAATCTATATAAAGAGTTTATTTACAATCTGTAATGAATTGATGTAATGAATGAGTTTGTTTGGATTGGCAGAAATCTTagcactgaaacacagacaAGCTTAAATCTAAATCTTTAATCAGACTGCAAAAATCTACCACACTGCTAAGATTGAAATGACTGAGTAACTAAGTTTTTATCTGTGTGCTGCCTGCCTATGCTACAGGAATCCCTCAGGTGGTTTTCATGACAAGAGTAGACTGCGCATGTCCGACGACAAAGGAGAATTTGCAAAACATCTACAAAAGCAAAAAGATTAGAGATAAAATGCGTGAGTGCAGTAATGCACTGGGCGTGCCTGTGAACTGCATCTTCCCTGTCTCGAACTATCACGAAGAGACCCATATTAATGAGAATATAAACTGCCTGATGCTGGATGCCTTAACACAGATTATATATTGGGCTAATGACTATGTGATCACACGTTCCAACAACCAAATTTCATATCAACAACCAATCCGCGAATAAAGAAATTTCacagaaaatatgaaaagcaGAATGCTAAACAATTCTGGCTATCTATTGGCTATCTGTCATTCAAATTAATCCTAATCCTTAATCCAAATCAATCCATTaatacaacacattttaaaacatgaaaattatattcattttatgatccacatttttaaaaggagTTTAAGGATAGAAATATACAGATAACATGCATGCTTtgtatttagttttaaaatCCTAGCCTGAACCTTGAAAGTTATATTTCATCTTACTTCTTTAGTGTATGAAAGAGTTTTAatttttccattattattatggaaTTGATTGTACCAGTGGCAAAGACTGAACAATTTAAAATTCTGGTTAACAGTGTAATGTTGACATGGAGACGCAAAAGAATAGTACACATTGCTATAATTAGTACATATTTCAGAGA
>TU92313
ACAAGAGTAGACTGCGCATGTCCGACGACAAAGGAGAATTTGCAAAACATCTACAAAAGCAAAAAGATTAGAGATAAAATGCGTGAGTGCAGTAATGCACTGGGCGTGCCTGTGAACTGCATCTTCCCTGTCTCGAACTATCACGAAGAGACCCATATTAATGAGAATATAAACTGCCTGATGCTGGATGCCTTAACACAGATTATATATTGGGCTAATGACTATGTGATCACACGTTCCAACAACCAAATTTCATATCAACAACCAATCCGCGAATAAAGAAATTTCacagaaaatatgaaaagcaGAATGCTAAACAATTCTGGCTATCTATTGGCTATCTGTCATTCAAATTAATCCTAATCCTTAATCCAAATCAATCCATTaatacaacacattttaaaacatgaaaattatattcattttatgatccacatttttaaaaggagTTTAAGGATAGAAATATACAGATAACATGCATGCTTtgtatttagttttaaaatCCTAGCCTGAACCTTGAAAGTTATATTTCATCTTACTTCTTTAGTGTATGAAAGAGTTTTAatttttccattattattatggaaTTGATTGTACCAGTGGCAAAGACTGAACAATTTAAAATTCTGGTTAACAGTGTAATGTTGACATGGAGACGCAAAAGAATAGTACACATTGCTATAATTAGTACATATTTCAGAGA
>TU92315
ACAAGAGTAGACTGCGCATGTCCGACGACAAAGGAGAATTTGCAAAACATCTACAAAAGCAAAAAGATTAGAGATAAAATGCGTGAGTGCAGTAATGCACTGGGCGTGCCTGTGAACTGCATCTTCCCTGTCTCGAACTATCACGAAGAGACCCATATTAATGAGAATATAAACTGCCTGATGCTGGATGCCTTAACACAGATTATATATTGGGCTAATGACTATGTGATCACACGTTCCAACAACCAAATTTCATATCAACAACCAATCCGCGAATAAAGAAATTTCacagaaaatatgaaaagcaGAATGCTAAACAATTCTGGCTATCTATTGGCTATCTGTCATTCAAATTAATCCTAATCCTTAATCCAAATCAATCCATTaatacaacacattttaaaacatgaaaattatattcattttatgatccacatttttaaaaggagTTTAAGGATAGAAATATACAGATAACATGCATGCTTtgtatttagttttaaaatCCTAGCCTGAACCTTGAAAGTTATATTTCATCTTACTTCTTTAGTGTATGAAAGAGTTTTAatttttccattattattatggaaTTGATTGTACCAGTGGCAAAGACTGAACAATTTAAAATTCTGGTTAACAGTGTAATGTTGACATGGAGACGCAAAAGAATAGTACACATTGCTATAATTAGTACATATTTCAGAGATTTTATGTTTAGCTCATTTCAGCTGTAATATACAAGGTTTCATGATAGTTATATTGGTCATTGATCTGATGTATTATTCTttgatgtttaaataaaactataaaatgtcCC
>XM_034304748.1
TGAAATGTTAAATACTCTCAAGGCATTTAACATTTGTAATGAAGTCCCAGAGCTCCGCTTCCTTCTGTATGGACCAGTTGGAGCAGGAAAGTCCAGCACAATAAACACCATCGGAACCGTTTTTGAAGGACGTCAGTTTGTGAACTGCCTGGCTGCTGCAATATCTACTACGAGTCACACTCTATGCTATGAACGATTTAGATTTGCAAATGAAGCAGGATCATTTCCTTTTGCCTTCAATGATGTAATGGGTGCAGAAGCAGAAGGTGGGGTGCACACTCAAGATATCATCACTGCTTTAAAAGGTCATATGAAAGAGGGTTACTTGtTCAACTCTAAATCTCCACTGTCTGAAAGCAACCATTACTACAATCAAAATCCCAGCCTGAGTGATCAGATGCACTGCCTGGTGTATGTCATACCAGCCGACAAGATTTCATTGATGGGAAatgatttgattaaaaaattgAAGAGTGTCCGAGAAGCAGCCAGTAGAATGGGAATCCCTCAGGTGGTTTTCATGACAAGAGTAGACTGCGCATGTCCGACGACAAAGGAGAATTTGCAAAACATCTACAAAAGCAAAAAGATTAGAGATAAAATGCGTGAGTGCAGTAATGCATTGGGTGTGCCTATAAACTGTATCTTCCCTGTCATGAACTATCACGAGGAGACCCATATGAATGAGGATATAAACTGCCTGATGCTGGATGCCTTAACACAGATTATACATTGGGCTAATGACTATGTGATCAAACGTTCCAACTACCAAATTTGA

Function

NR:

description
PREDICTED: interferon-induced protein 44-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92312 True 959 lncRNA 0.33 2 6239066 6247446
TU92313 False 703 lncRNA 0.33 2 6239066 6247190
TU92315 False 814 lncRNA 0.32 2 6238955 6247190
XM_034304748.1 False 778 mRNA 0.42 5 6246828 6253346

Neighbor

gene id symbol gene type direction distance location
LOC117597339 NA coding downstream 7763 6228208 ~ 6231192 (-)
arhgap15 arhgap15 coding downstream 756980 5440481 ~ 5481975 (-)
acvr2aa LOC108266626,LOC108412453,LOC107709421,LOC107673126 coding downstream 1080133 5115388 ~ 5158822 (-)
epc2 epc2 coding downstream 1135433 5091309 ~ 5103522 (-)
ubxn4 ubxn4 coding downstream 1378605 4850639 ~ 4860350 (-)
mcf2lb LOC108266232,LOC108430488 coding upstream 154815 6408161 ~ 6431124 (-)
LOC113534875 rnf17 coding upstream 198018 6451364 ~ 6708475 (-)
LOC113534871 LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890 coding upstream 228999 6482345 ~ 6485575 (-)
LOC113534866 LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894 coding upstream 250483 6503829 ~ 6506790 (-)
LOC113534867 LOC108262141,LOC108266899,LOC108266212,LOC108266892,LOC108266894,LOC108266896,LOC108266891,LOC108266893,LOC108266890,LOC108266242 coding upstream 275239 6528585 ~ 6532640 (-)
G77763 NA non-coding downstream 36182 6202569 ~ 6202773 (-)
G77719 NA non-coding downstream 119817 6118931 ~ 6119138 (-)
G77645 efnb2 non-coding downstream 665571 5569857 ~ 5573384 (-)
G77629 NA non-coding downstream 690790 5493317 ~ 5548165 (-)
G77540 NA non-coding downstream 824179 5414341 ~ 5414776 (-)
LOC117597312 NA non-coding upstream 524 6253870 ~ 6255150 (-)
G77797 NA non-coding upstream 27653 6280999 ~ 6281424 (-)
G77799 NA non-coding upstream 36451 6289797 ~ 6290011 (-)
G77840 NA non-coding upstream 72753 6326099 ~ 6328085 (-)
LOC117597449 NA non-coding upstream 280104 6533450 ~ 6536271 (-)
LOC113534947 NA other downstream 899322 5331584 ~ 5339633 (-)
G77283 NA other downstream 1394076 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 2422896 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 3433092 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 3485149 2684508 ~ 2753806 (-)
LOC117597343 NA other upstream 69697 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 275700 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other upstream 289087 6542433 ~ 6545953 (-)
G78159 NA other upstream 790441 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 1195702 7449048 ~ 7451561 (-)

Expression


Co-expression Network