LOC117597343


Basic Information

Item Value
gene id LOC117597343
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6323043 ~ 6324680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU92381
TGTCAGCGGAGCAGGAAATTCACTCATCATCAGCAGAGGAGGAATATACTTCTGTTCATGCACGTGCTTGCATGCATGAAGCAGATCATCGTGTGTCAGCGGAGCACCAACATCACACAAACAGactagaaaatgttgtaggcattaagggaacgtccttctcctggctcaggtgtcttctctacgcatactaaggtaaagtttggtgttctgtaaggttctgttttaggcccactgctcttttctttatatatgctacctctgggcaaaattatttgtaaaca
>XR_004578179.1
CATCATCGTGTGTCAGCGGAGCAGGAAATTCACTCATCATCAGCAGAGGAGGAATATACTTCTGTTCATGCACGTGCTTGCATGCATGAAGCAGATCATCGTGTGTCAGCGGAGCACCAACATCACACAAACAGactagaaaatgttgtaggcattaagggaacgtccttctcctggctcaggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92381 True 284 lncRNA 0.44 3 6323043 6324670
XR_004578179.1 False 184 ncRNA 0.48 3 6323153 6324680

Neighbor

gene id symbol gene type direction distance location
LOC113534858 LOC108266244 coding downstream 79331 6225854 ~ 6243712 (-)
LOC117597339 NA coding downstream 91851 6228208 ~ 6231192 (-)
arhgap15 arhgap15 coding downstream 841068 5440481 ~ 5481975 (-)
acvr2aa LOC108266626,LOC108412453,LOC107709421,LOC107673126 coding downstream 1164221 5115388 ~ 5158822 (-)
epc2 epc2 coding downstream 1219521 5091309 ~ 5103522 (-)
mcf2lb LOC108266232,LOC108430488 coding upstream 83481 6408161 ~ 6431124 (-)
LOC113534875 rnf17 coding upstream 126684 6451364 ~ 6708475 (-)
LOC113534871 LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890 coding upstream 157665 6482345 ~ 6485575 (-)
LOC113534866 LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894 coding upstream 179149 6503829 ~ 6506790 (-)
LOC113534867 LOC108262141,LOC108266899,LOC108266212,LOC108266892,LOC108266894,LOC108266896,LOC108266891,LOC108266893,LOC108266890,LOC108266242 coding upstream 203905 6528585 ~ 6532640 (-)
G77799 NA non-coding downstream 33032 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 41619 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 67893 6253870 ~ 6255150 (-)
G77763 NA non-coding downstream 120270 6202569 ~ 6202773 (-)
G77719 NA non-coding downstream 203905 6118931 ~ 6119138 (-)
G77840 NA non-coding upstream 1419 6326099 ~ 6328085 (-)
LOC117597449 NA non-coding upstream 208770 6533450 ~ 6536271 (-)
G78172 NA non-coding upstream 752741 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 860753 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 952139 7276819 ~ 7292595 (-)
LOC117597406 LOC108266244 other downstream 69697 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 983410 5331584 ~ 5339633 (-)
G77283 NA other downstream 1478164 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 2506984 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 3517180 2801006 ~ 2805863 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 204366 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other upstream 217753 6542433 ~ 6545953 (-)
G78159 NA other upstream 719107 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 1124368 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 1219826 7544506 ~ 7549631 (-)

Expression


Co-expression Network