G77840


Basic Information

Item Value
gene id G77840
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6326099 ~ 6328085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU92383
TATCTAAACCTTTTAAAgtcatcattttattattcagttcttAAACTATGCCAATGCATGTAAACAGATTTGAAAATCATTGGAATGTTGCAATCAACCAAAATcttaaactgtccagtttcagtaaccttttgcccactgtagcctcaaatttctgttcttggctgacaggagtggaacctaatTTTCTGTTGTTGTATCCCATCTGGCCCTTCTGGAACATGGTCTAGTGATGTTGTAGCCTGTCCGCTTCAAGTTTCAgcatgctgtgtgttctgagatacttttctgctcaacatggttgtaaaaagtgagtttctgagttactgtagacttcctgtcagctcaaaccagtctggctacactcaaaaaaaagatttttagagGTTGTTCATTTTACCTGaacatttcatttgcatttaacaCCATTGTATTAGAATTCTTCTTCAAACACAATCATATCATGAAATGACTTGCGCTCATTTCAGTGAAGTAGTTTATTCAAACAGGGCAACTGGCCTAGCAGGAAGTATTTTCAACAGAGATTTTCAACAATCAACAAGTCTTTCCATTGATTTTGTATATATGTAACAAGACTATAAGTCCTGCCTTGTAGGGGAAATTACTATGTGTCCTTGGAAGACCTAAAAGCGAAAGGATCTTAATCCCCACTCCGGGACTTTTAGTCTCagtatgcactgtgtgtgtgtgtatatggtttAGTTTACACTATTGTGAATTAAAAGAATAGGTAAAGTAGGCTTCAGGTAAGTAAGTGTCAGTACAGTGGCTCCCTGAAGTGTGTCCATGTGAggtaaaataaatcattcacaTTCCCACCCTCCTAAACCTAACAGTGTAAGTGAGACGCCCCTACTCCAAGGTAAGTTGCACAAATAACTAACGGCCCGTTAACAATTAGtagtttattctttttctcttttttttaggaAACTGGACTTTTCTTTGAAAGAATTGGCTCTGgttaaatgaaagaatgaaataaaacaaataactgaTGACAAGTTCTCTGAAGTTTTCTTTTAGCTTTGGATAAACCGTTCAACACTTCTGTTTAACCCTTCATACACAAGTTTCTCAGAATTAAATTCAACATCAGAGCACACATTGATTTTCAAACAGCACGGGATATCTCAAACAAAACTCTGAACCATATAAATGACTCTTGCAATTGAATTCAAATAATTCACTTCAAATGAACTCTGAAATAACTCGACTCAGTTCAAACAAGTCTTATCAACGTATGATTCAGTTCTCACACCAACCCAGTTCAATTACTTAGTTCAAGTTCACAGTTCAGTTCAATCTATATCAGTGAAgagttcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaagaatgTTTGTACCAGTCTGTAGCAACCATGAAATTGATGAGATGACTTGAGATAACTTGAGATGACTTGTGACGACTTGAGATGACTTGTGATGATGAAATGAACAGCTGGAGCTAGACAGTGAGGAGATGTGGTCAGGATGGcaggttaataataaaaacacatgagCAAAAACTCTGCGTGGCCAGAAAAAACTTGGGAACTTTCTGGAACAAAATGGCGCAGCTCAGCCACAGCACACACTGACTCGGTCTCAAAAGAAAAGTGTTTCCCAAAAGCAAAACTGTTCGTAGGCGAAGGACAGTCTCGACAAAAATGCAAAGATTCTcagagagagcagaaaaaattaaacactcCGTGAAAAACTCACTTCCAGTTCATGTGCACATTCTCCACATTCTCGCGCACTACCAAGTGCACTTAAATGATGCGCAGGAAGAAATCAATGTCTCTCAATCTGAAGCACAGTTCATAAATGACTCTGGAAAGCAGCAAAACTCTCAAAAACTCAAATTAAATGTGTATTACTATCTTCTTTCACGTTTTCCGCTGCGAAACTGTCGATCTCTCACACAGCAATCATGGCGTGTCTCTCTCGTAAAAActgc

Function

NR:

description
LOW QUALITY PROTEIN: protein FAM98A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92383 True 1987 lncRNA 0.38 1 6326099 6328085

Neighbor

gene id symbol gene type direction distance location
LOC113534858 LOC108266244 coding downstream 82387 6225854 ~ 6243712 (-)
LOC117597339 NA coding downstream 94907 6228208 ~ 6231192 (-)
arhgap15 arhgap15 coding downstream 844124 5440481 ~ 5481975 (-)
acvr2aa LOC108266626,LOC108412453,LOC107709421,LOC107673126 coding downstream 1167277 5115388 ~ 5158822 (-)
epc2 epc2 coding downstream 1222577 5091309 ~ 5103522 (-)
mcf2lb LOC108266232,LOC108430488 coding upstream 80076 6408161 ~ 6431124 (-)
LOC113534875 rnf17 coding upstream 123279 6451364 ~ 6708475 (-)
LOC113534871 LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890 coding upstream 154260 6482345 ~ 6485575 (-)
LOC113534866 LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894 coding upstream 175744 6503829 ~ 6506790 (-)
LOC113534867 LOC108262141,LOC108266899,LOC108266212,LOC108266892,LOC108266894,LOC108266896,LOC108266891,LOC108266893,LOC108266890,LOC108266242 coding upstream 200500 6528585 ~ 6532640 (-)
G77799 NA non-coding downstream 36088 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 44675 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 70949 6253870 ~ 6255150 (-)
G77763 NA non-coding downstream 123326 6202569 ~ 6202773 (-)
G77719 NA non-coding downstream 206961 6118931 ~ 6119138 (-)
LOC117597449 NA non-coding upstream 205365 6533450 ~ 6536271 (-)
G78172 NA non-coding upstream 749336 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 857348 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 948734 7276819 ~ 7292595 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding upstream 986612 7314697 ~ 7340303 (-)
LOC117597343 NA other downstream 1419 6323043 ~ 6324680 (-)
LOC117597406 LOC108266244 other downstream 72753 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 986466 5331584 ~ 5339633 (-)
G77283 NA other downstream 1481220 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 2510040 3786956 ~ 3816059 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 200961 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other upstream 214348 6542433 ~ 6545953 (-)
G78159 NA other upstream 715702 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 1120963 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 1216421 7544506 ~ 7549631 (-)

Expression


Co-expression Network