LOC113534870 (LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141)


Basic Information

Item Value
gene id LOC113534870
gene name LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6542433 ~ 6545953 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU92666
GTCTGAGACGACTGCAGTCCTTCATAAACAGCCTGCAGTGTTCTGCTCTGGGGAGTTTAGTTTTATTCTCACTTTGTGAAGAAATCTAAATCTCATTTTCGGCACTGTGAAAGGAAGTGATTACTAACTGGACCTACAAAGTTATTTGTTTAACCTGAAAGAAACCTGAATTCAGGGTGTGAATGCTTTGCaccaaagtgaaagtgaaattctAAGCATTTGGATTGGAGAGAACAACAacagcagtaaaataaaatggcttaTAAGTTTTCAGAGGAGGATTTCTCCTGTCCTGTGTGCTGTGAAATCTTCAAGGATCCTGTTTTTATACACTGcagtcacagtgtgtgtaaagtgtgtttgcAGCAGTTCTGGGAGACCAAAGGATCCAGAGAATGTCCTGTTTGTAGGAGGAAGTCATCTATGTCTGATCTTCCCACAAACCTGGCCTTAAAGAACCTGTGTGAGACTTTCTTACAGGAGAGAAGTCAGAGCTCTTCATCAGCATCTGAAACAGTCTGCAGTCTGCACAGTGAGAAACTCAAACTCTTCTGTCTGGACGATCAACAGccggtgtgtgtggtgtgtcagACTTCAAGAAAACACACCAACCACAAATTCTGCCCCATTGAAGAGGCAGTAACAGACTGtaagGAGGAGGTCAAAACTGCACTGAAGCCCCTACAGGAGAAACTGAAGATCTTTAAAGACTGTAAACTGAACTGGAGTCAGACTGCAGAACATATAAAGATTCAGGCCCAACACACAGAGCGGCAGATTAAAGAGGTGTTTGAGAAGCTTCACCAGTTTCTACGAAATGAAGAGGCAGCCAGGATCGCTGcactgagagaggaagaggagcagaagaGTCAGATGATGAAGGAGAAGATTGAGAAGCTGAGCAGAGACATATCATCTCTTTCAGACACAATCAGAGACATAGAAGAGGAGATAAGTGCTGAAGATGTCTCGTTCTTACAAAACTACAAGGACACAGTGAAAAGAGCTCAGTGCACACTGCAGCATCCAGAGGAGCTTTCAGGAGCACTGATCCATGTGGCA
>XM_026927839.2
CTGCAGTCCTTCATAAACAGCCTGCAGTGTTCTGCTCTGGGGAGTTTAGTTTTATTCTCACTTTGTGAAGAAATCTAAATCTCATTTTCGGCACTGTGAAAGGAAGTGATTACTAACTGGACCTACAAAGTTATTTGTTTAACCTGAAAGAAACCTGAATTCAGGGTGTGAATGCTTTGCaccaaagtgaaagtgaaattctAAGCATTTGGATTGGAGAGAACAACAacagcagtaaaataaaatggcttaTAAGTTTTCAGAGGAGGATTTCTCCTGTCCTGTGTGCTGTGAAATCTTCAAGGATCCTGTTTTTATACACTGcagtcacagtgtgtgtaaagtgtgtttgcAGCAGTTCTGGGAGACCAAAGGATCCAGAGAATGTCCTGTTTGTAGGAGGAAGTCATCTATGTCTGATCTTCCCACAAACCTGGCCTTAAAGAACCTGTGTGAGACTTTCTTACAGGAGAGAAGTCAGAGCTCTTCATCAGCATCTGAAACAGTCTGCAGTCTGCACAGTGAGAAACTCAAACTCTTCTGTCTGGACGATCAACAGccggtgtgtgtggtgtgtcagACTTCAAGAAAACACACCAACCACAAATTCTGCCCCATTGAAGAGGCAGTAACAGACTGtaagGAGGAGGTCAAAACTGCACTGAAGCCCCTACAGGAGAAACTGAAGATCTTTAAAGACTGTAAACTGAACTGGAGTCAGACTGCAGAACATATAAAGATTCAGGCCCAACACACAGAGCGGCAGATTAAAGAGGTGTTTGAGAAGCTTCACCAGTTTCTACGAAATGAAGAGGCAGCCAGGATCGCTGcactgagagaggaagaggagcagaagaGTCAGATGATGAAGGAGAAGATTGAGAAGCTGAGCAGAGACATATCATCTCTTTCAGACACAATCAGAGACATAGAAGAGGAGATAAGTGCTGAAGATGTCTCGTTCTTACAAAACTACAAGGACACAGTGAAAAGAGCTCAGTGCACACTGCAGCATCCAGAGGAGCTTTCAGGAGCACTGATCCATGTGGCAAAACATCTGTCCAACCTGAAGTTCAGAATCTGGGAGAAGATGCAGGATGCCGTCCAATACAcacCTGTAACTCTGGACCCCAACACTGTTCATCCTAAACTCATTGTATCTGATGATCTGATCAGTGTGAGACTCAGTGATGAGAAGCAGAAACTTCCTGATAATCCAGAGAGATTTGATGATTGTTTGTGCATCCTGGGCTCTGAGGGCTTTAACTCAGGGACACACTGCTGGGATGTTGAAGTTGGAGACTGTACATTCTGGATTGTGGGTGTGATGACAGAATCTGCTCAGAGGAAGGGGAATGTATTCTCCAGAAGTGGAATCTGGTGTGTGGAGTATTATCATTGTGAATATGTAGCAGGTTTTACACCACAGCCTTTCACTCTCCTCTCAGTAGCACAGAAACTCCAGAGGATCAGAGTGCAGCTGGACTgggacagaggaaagctgtcaTTCTCCGAccctctcactaacacacacatacacactttcacacacacatttactgacAAATTACTGCCATTCCTATATGTTTATGGTAAAGAATCTCCTCTAAAGATCCTCCCACTTCAGTGCTCTGTAAGAGTGAATCAGATCAGTTAGAGCTGATATTGTTTTATTCCGGTTCATTAATGAAATATTGcagattaaaacatttatgttcTTTGTGAAAGTTTGTTTTTACAGAAGCACTGAACAGTttattgtgaaatgttttttcaaGAGCTATGACGTTATTTCGACTCGTcagttaaattaatataatgtcAAAACTGGAAATATTGATAGAATATCTTATTCTGAgtactaaaaaatataatatctcaAAATACTGATACATCTTGAAATTCCTGTTTATTAAATGACTAAATCTTTTTCCCAAAACTTTCAGTTCAGTGCttccacaaacaaacaaac

Function

NR:

description
PREDICTED: tripartite motif-containing protein 35-like

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
TU92666 False 1062 TUCP 0.44 5 6544118 6545953
XM_026927839.2 True 1972 mRNA 0.41 6 6542433 6545942

Neighbor

gene id symbol gene type direction distance location
LOC113534867 LOC108262141,LOC108266899,LOC108266212,LOC108266892,LOC108266894,LOC108266896,LOC108266891,LOC108266893,LOC108266890,LOC108266242 coding downstream 9793 6528585 ~ 6532640 (-)
LOC113534866 LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894 coding downstream 35643 6503829 ~ 6506790 (-)
LOC113534871 LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890 coding downstream 56858 6482345 ~ 6485575 (-)
mcf2lb LOC108266232,LOC108430488 coding downstream 111309 6408161 ~ 6431124 (-)
LOC113534858 LOC108266244 coding downstream 298721 6225854 ~ 6243712 (-)
LOC113534869 LOC108266892,LOC108262141,LOC108266212,LOC108266891,LOC108266894,LOC108266899,LOC108266890,LOC108266896,LOC108266893 coding upstream 17960 6563913 ~ 6567039 (-)
LOC117597446 LOC108266891,LOC108266893,LOC108266892,LOC108266212,LOC108266242,LOC108262141,LOC108266890,LOC108266899,LOC108266894 coding upstream 47221 6593174 ~ 6606144 (-)
LOC113534868 LOC108266892,LOC108266891,LOC108266893,LOC108266242,LOC108266896,LOC108266899,LOC108266894,LOC108266212,LOC108266890 coding upstream 47581 6593534 ~ 6596688 (-)
LOC117595670 LOC108266894,LOC108266899,LOC108266212,LOC108266890,LOC108266896,LOC108262141,LOC108266891,LOC108266892,LOC108266893,LOC108266242 coding upstream 67582 6613535 ~ 6618013 (-)
LOC117597448 epb41l5,LOC107566159 coding upstream 83018 6628971 ~ 6677161 (-)
LOC117597449 NA non-coding downstream 6162 6533450 ~ 6536271 (-)
G77840 NA non-coding downstream 214348 6326099 ~ 6328085 (-)
G77799 NA non-coding downstream 252422 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 261009 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 287283 6253870 ~ 6255150 (-)
G78172 NA non-coding upstream 531468 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 639480 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 730866 7276819 ~ 7292595 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding upstream 768744 7314697 ~ 7340303 (-)
G78259 NA non-coding upstream 796553 7342506 ~ 7343664 (-)
LOC117597343 NA other downstream 217753 6323043 ~ 6324680 (-)
LOC117597406 LOC108266244 other downstream 289087 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 1202800 5331584 ~ 5339633 (-)
G77283 NA other downstream 1697554 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 2726374 3786956 ~ 3816059 (-)
G78159 NA other upstream 497834 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 903095 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 998553 7544506 ~ 7549631 (-)
G78626 LOC108266388 other upstream 1198773 7744726 ~ 7747638 (-)
G79221 NA other upstream 2118737 8664690 ~ 8665579 (-)

Expression


Co-expression Network