G78627


Basic Information

Item Value
gene id G78627
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 7747843 ~ 7748052 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU93320
AGTCAAGTGAATTATACTGTAAACTGTTCTGCTGCATTATGTAGAAAATAGAGGAAACATCATTTGGTGgtgttaaatgttaaagaaaaaaggtAATGTGGCTAACAGGGATAAGACAAGTCAGATCATTTGCAAAAGCTGCTGCCTCTAGCCTTCCTTCATTATTAGCAAGATTGTACTTATCAGGTAATAAAGACACCTTCAATCAAC

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU93320 True 210 lncRNA 0.35 1 7747843 7748052

Neighbor

gene id symbol gene type direction distance location
idh1 idh1,LOC107663883 coding downstream 133656 7600954 ~ 7614187 (-)
plekhm3 plekhm3,LOC107733641,LOC107663884,LOC107551948,LOC107698528 coding downstream 153734 7557469 ~ 7594109 (-)
LOC113535006 LOC108266249,LOC108266251,LOC108266250 coding downstream 500701 7235244 ~ 7247142 (-)
LOC113535005 LOC108266250,LOC108266249,LOC108266251 coding downstream 517197 7226004 ~ 7230646 (-)
si:ch73-116o1.2 LOC108266255,LOC108430494,LOC107551943,LOC107600440,LOC107663912,LOC107733654 coding downstream 776743 6957846 ~ 6971100 (-)
armc8 armc8 coding upstream 1392 7749444 ~ 7766585 (-)
rab5b rab5b,LOC108266395,LOC107551955,LOC108430508,LOC107738511,LOC107598172,LOC107698530 coding upstream 28414 7776466 ~ 7783282 (-)
lcmt2 lcmt2,crygs,LOC103033891,LOC107756035 coding upstream 44907 7792959 ~ 7803587 (-)
slc10a2 slc10a2 coding upstream 244847 7992899 ~ 7997884 (-)
gtpbp8 gtpbp8 coding upstream 268817 8016869 ~ 8023205 (-)
G78364 NA non-coding downstream 133230 7614403 ~ 7614613 (-)
G78305 NA non-coding downstream 256200 7491437 ~ 7491643 (-)
G78303 NA non-coding downstream 258125 7489337 ~ 7489718 (-)
G78259 NA non-coding downstream 404179 7342506 ~ 7343664 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding downstream 407540 7314697 ~ 7340303 (-)
G78653 gtf2e1 non-coding upstream 75236 7823288 ~ 7883288 (-)
G78750 NA non-coding upstream 235489 7983541 ~ 7983886 (-)
G78759 LOC108266649 non-coding upstream 267888 8015940 ~ 8016406 (-)
LOC113546990 NA non-coding upstream 289247 8037299 ~ 8055498 (-)
G78766 NA non-coding upstream 297083 8045135 ~ 8045536 (-)
G78626 LOC108266388 other downstream 205 7744726 ~ 7747638 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other downstream 198212 7544506 ~ 7549631 (-)
LOC117597373 NA other downstream 296282 7449048 ~ 7451561 (-)
G78159 NA other downstream 701034 7043787 ~ 7046809 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other downstream 1132183 6529046 ~ 6615660 (-)
G79221 NA other upstream 916638 8664690 ~ 8665579 (-)
si:dkey-229b18.3 LOC108266764 other upstream 926752 8674804 ~ 8683415 (-)
G79349 NA other upstream 1023414 8771466 ~ 8772429 (-)
LOC117597331 NA other upstream 1109767 8857819 ~ 8877236 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other upstream 1248731 8996783 ~ 9019448 (-)

Expression


Co-expression Network