tlr7 (tlr7,LOC108266215)


Basic Information

Item Value
gene id tlr7
gene name tlr7,LOC108266215
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 725511 ~ 729048 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910510.2
aaaacaaatgtttaacatGTGCTCAGAAATTCGTCTCCAGAGTCAAGCAGCAGAGTTTAAAAACCGTAGACGGATCGGCAGGCTGTGATGCCAGAGCCCAATAAAAAGATGGCAAGAAGGATCATCGTCCTTAAAATAGCCATCCTTCTCCTTTTCTGTCCATCTGCTTGCTCGGAAACCGAATGGTACCCCAAAAGTCTGCAATGTGACGTGTCAAGGCTTAGCAATGACAGCGAAGTGAAAGTGGACTGCACCAGCAGAGGATTAACGTCGATTCCTCCAGGAATTCCGTCCAATACCACCAACCTGACGCTTACCATCAACCACATTCCTCACATCAACGGCACCTCTTTCCTCGGCCTGAGCAACATCACCGAGATCGACATGCGCTGCAACTGCGTGCCCATCAAGATCGGCCCGAAAGACCACGTGTGCACAAAAAGTGTGCAAATCGATAATGGAAGCTTCTGGCAACTTAAGACTCTCAAGTCGCTTTACCTGGACGGAAATCAGCTCTTCAGCATCCCTAAAGGACTTCCTCCGAACGTCGTGCTCCTCAGCCTTGAGGTCAACAGCATTTCTTCAATTCTGAAGGAAAATCTCACGGAGCTTACCAACATCGAGATCCTGTACCTTGGCCAGAACTGTTACTTCCGAAACCCATGCAATAGATCTTATTATGTTGAGGAGGACGCTTTTTTGCAGCTTGACAAATTGACTTTGCTGTCGCTTAAGTCAAACAATTTGTCTTATGTGCCTCACAAACTACCGTCGAGTCTCAGGGAGCTCTACTTATACAACAATAACATACAGAAGGTAGTAGCGGAGGATTTTCACAACTTGACCGAGTTAGAGATCCTGGATTTGAGTGGAAACTGTCCCCGCTGTTATAACGCGCCTTTCCCGTGCGTTCCTTGTGCTAACGATGCTCCTCTTCAGATTCATGAACACTCCTTCCTCAATTTGACCAAACTTAAAATTCTGCGGCTTCACAGCAACTCTCTCACTACCGTGCAATCACAATGGTTTCAAGGCTGCAAAGAACTTCAAGTGTTAGACCTCTCCAGCAACTTTTTAGCAAAAGacataacacacacttcctttccTCATTCACTGCCTTTCCTAGAAGAACTAGATCTCTCTTTTAATTATGAGCTCCAGAGGTATCCTTCATCACTAAACCTGTCTCAGTCTTTCTCCTCTCTGAAGTCTCTCAGGATCCTGAGAATCAGAGGCTTTGTGTTCCAAGAACTCAAACAACAAGATATTCAACCTCTGACTTTTTTGGAGAATCTCGAAATGATTGACCTCGGGACAAACTTCATCAAGTTAACTAACCTAAGCATCCTCAAAGGGCTGAAAAATTTCCGCATCATCAATTTATCGGACAACAAAATCTCATCGCCTTCAGAGGCTGAGCATGCAGCTGCACTGGCAATGGCACGTGGCTTTCCCAAGCAGGACGACACTTCCCCAATGTCACGAGGCGCTCAGTACCGCAGTGGAGAAGTGAGAGAGATTCACTATTTCAGATATGATGAATATGCGCGAAGCTGCAAAAGTAAAGATAAAGAACTTGGAACTCTGAGTCCTTTCAACACACAGTGTAGCTCCTTTGGAAAAACCCTGGATCTCAGcagaaacaacattttttttttacattcaagaTTCTTGAATCTCGGTGAGCTCCGGTGTCTCAATCTATCAGGAAATGCCATGAGCCAAGCTTTAAATGGTActgaatttatttatcttaaaaatctgaaataccTCGACTTCTCCCACAATCGTCTTGATTTGATGTTCTCCTCAGCGTTCAAGGAACTGAGCAATTTAGTCGTGTTGGACATCAGTCACAACAATTATTACTTTGAAGCAGAGGGCTTGACTCACATGCTAAATTTTACCAAAAATCTCCACAAACTGACCAAGTTAATAATGAACCACAATCAAATATCCACATCCACCAACATGGAGATGCAGAGTTTATCTCTGGAATATTTGGAATTTAAAGGCAACCGCCTTGATCTATTATGGCGAGATGGTGATACGAGATATCACAGctattttagaaaattaatggTCTTAAAATCCCTCGACATCTCTCACAACAACCTTAACTTCATTCCCAAGCAGGTTTTTCAAAGCCTTCCGGAAACACTCACAGAATTCCACATTACAAACAACATATTGAAATCGTTCTACTGGGACGGTCTTAGGTTTCTACCAAACCTGGAGCTCTTAGACCTTAGTGGTAATCACTTAACAATCGTGCCTCCAAAGCTTTCCAACTGTTCGAAATCTATTGCGACGCTGGTTTTGCGCAAGAATCAAATCTTGAGGCTGAGCCCAGAGTTCCTCCAAGATGCGTTTAGCCTGAAAAGGCTGGATCTGAGTTATAATCAAATCAAGTACATTGAAGAGTCAAGCTTCCCTGAAAACGTCATAGACAAGCTGGAGGTTCTGTTCTTAAACAACAACCGGTTTGTGTGCTCGTGCAACGCCACGTGGTTCGTCCGATGGATCAATCGCACGTCTGTGTACATTCCCCGACTAGCCACTGACGTCACCTGTGCTTCCCCTGGCACGCAGCGAGGCCAGAGTGTGATTTCTCTCAACCTCCAAGCCTGCCAGCATAACTCTCTGTCCATAATTCTCAGTATCCTGACCACTTCTGTGATCCTGAGTGTCCTCATCCTGTCCATCTCCAGCCATCTCTTTCTCTGGGATGTGTGGTACATCTACCACTTCTGCCTCGCCAAAATCAAGGGCTACCGTCGCCTTCTCTCGGAAAGCACGGCATACGACGCCTTTGTAGTCTACGATAAAACTGACACGGCGGTGAGCGACTGGGTGTTGCAGGAGCTCCGTGTTCAGCTGGAAGACCGTGGTGAACCAAGGCTCCACCTTTGCTTGGAAGAACGTGACTGGGTTCCGGGTTGTCCCCTCATTGAGAACCTTTCTCAAAGCATTCAGCTTAGCAAGCGCACCATATTCCTCCTGACCACTCACTTTATCCGGAGTGGCCACTTCAAGACCGCGTTCTACCTGGCACACCAGCGGCTCATGGATGAGAAGGACGACGTCATCATTCTGATTTTCCTGGAGAGATTTTCATCCAGTCACTCCAAGTACCTGAGGCTCAGGAAGAGGCTGTACAAAAGATCCGTGCTGGAATGGCCAAGGAATCCTCAAGCGCAGCAGTATTTCTGGTTTTGTCTCAGGAGCGTCATGGCCACTGAAAGCCAGCAGCACTACAACAAGCTCTTCCAGGAAACCCTGTAACAGTCATGATGGGatttttacatacagtat

Function

symbol description
tlr7 Predicted to enable single-stranded RNA binding activity and transmembrane signaling receptor activity. Predicted to act upstream of or within defense response to other organism; inflammatory response; and toll-like receptor signaling pathway. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blood; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in COVID-19 and X-Linked immunodeficiency 74. Orthologous to human TLR7 (toll like receptor 7).

NR:

description
toll-like receptor 7

GO: NA

KEGG:

id description
K05404 TLR7; toll-like receptor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910510.2 True 3315 mRNA 0.46 2 725511 729048

Neighbor

gene id symbol gene type direction distance location
LOC113524316 LOC108272333 coding downstream 1099 720627 ~ 724412 (-)
arsh LOC108266883 coding downstream 40033 675519 ~ 685478 (-)
fancb fancb coding downstream 224304 490480 ~ 501207 (-)
gpm6bb gpm6b,LOC108414227,LOC105898107,LOC103023481,LOC100694635 coding downstream 266828 433287 ~ 458683 (-)
trappc2 trappc2 coding downstream 309453 412573 ~ 416058 (-)
dct dct coding upstream 98233 827281 ~ 833892 (-)
LOC113524324 LOC108266872,LOC108260750 coding upstream 215271 944319 ~ 957738 (-)
LOC113524329 NA coding upstream 373992 1103040 ~ 1112551 (-)
trnas-uga_4 NA coding upstream 501261 1230309 ~ 1230390 (-)
trnal-cag_10 NA coding upstream 501539 1230587 ~ 1230669 (-)
G75356 NA non-coding downstream 4905 719505 ~ 720606 (-)
G75332 NA non-coding downstream 23939 630444 ~ 701572 (-)
LOC113524353 NA non-coding downstream 63420 660906 ~ 662091 (-)
LOC117597328 NA non-coding downstream 64792 653153 ~ 660719 (-)
G75240 NA non-coding downstream 163548 561353 ~ 561963 (-)
G75365 NA non-coding upstream 31304 760352 ~ 760838 (-)
G75369 NA non-coding upstream 35247 764295 ~ 764555 (-)
G75372 NA non-coding upstream 38313 767361 ~ 772430 (-)
G75348 NA non-coding upstream 67774 796822 ~ 892057 (-)
G75429 NA non-coding upstream 198811 927859 ~ 928966 (-)
tmsb4x NA other downstream 6396 691080 ~ 719115 (-)
LOC113524348 LOC108266920 other downstream 350867 372567 ~ 374644 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other downstream 395021 323463 ~ 330490 (-)
nms pdcl3,nms other downstream 524499 195031 ~ 201012 (-)
G75076 NA other downstream 562934 162214 ~ 162577 (-)
frmpd4 frmpd4 other upstream 544 729592 ~ 765991 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other upstream 129356 858404 ~ 864607 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other upstream 190848 919896 ~ 936968 (-)
LOC113524372 NA other upstream 208964 938012 ~ 938203 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other upstream 416249 1145297 ~ 1159338 (-)

Expression


Co-expression Network