LOC113524326 (LOC108266219,LOC108266218,LOC108266898)


Basic Information

Item Value
gene id LOC113524326
gene name LOC108266219,LOC108266218,LOC108266898
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 96182 ~ 106080 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910531.2
TGTTATAATGAGTTCAGCAGGAGACAGACAGCGCTCCTCCAGGAAGTCTCGGGCTCCTGATCCTGCTCCCTCACAGCTGTGTGAGGATGTGAAAACAGAGACTTCAGATGGAGGAACATTCGACGTGTCAGAAGTGAAGAAAGAGGAGACGCTGGAGCTGAACATCTACAACCATGGAGACGACGCTGACAACACACCTGAAGTTATCTCCATTAAAGAGGAAAATCCTGACAATAAAGACTACCTCTtgTGAGGTTCACGGACTGCCTCTCTTCATCCCTGATACTCCTGTTCCCATGGGAGTCCCTGACCGAGCCAGACAAACTCTTCCTCCTGGACTAGAGATTCGGAAGTCCGGTATTCCTGACGCAGGCCTGGGAGTGTTTAATAAGGGGGAGACTGTTCCAGTAGGCGCACACTTCGGACCCTACCAGGGAGAGCTGGTAGACAGAGAGGAAGCCATGAACAGTGGATACTCTTGGGTGGTCTACAGGAGCGGGCAGTGTGAAGAATACATAGATGCCAAGAAAGAGATGCATGCGAATTGGATGAGGTATGTGAATTGTGCTCGTAATGATGAAGAGCAGAATCTTGTGGCTTTTCAGTATCGAGGGAGCATTCTGTATCGCTGCTGTCGACCCATTAACCCAGGACAGGAGCTCATGGTGTGGTATGAAGAGGAGTACGCTAAAGATCTCTGCCCTGCATTTGATTGCCTCTGGAACAAAAAGTGCTCTGCAGATGAAGACAATGCCCTGTTGCAAGTCTTCGCCTGCTGCTTGTGTCCACTGTCCTATACATCTCAAACTTACCTCCACAAACACATCTGGCGATGCCACTATGAAGAATACGTGAGACTTCAGGAATCAGGGGAGATTAAATATGAGATTCTGATTCCCACAAAAGGCTTCAGTCGTCAGCAAACATCATCTGGTACTCTCCATTCTGACACTTCTCACAATGATATACAGAAAGAAATTCATCACTGCTCAGACAGTGAAAAGAGTTTTACTCTTCAAGAACATCAGCGCATTCACAAaggagagaagccatatcacTGTTCTCAGTGTGATAAAAGTTTTACTGACCAAAGTAATCTCCGAAAacatcagcgcattcacactggagagaagccatatcactgctcacagtgtggaaaacGTTTTACTCAACAGGGTAATCTCCGCAAACATGAGCGTGTTCACACAGAAAAGAAGCCATAtcactgctcagagtgtggCAAGAGTTTCCATCAACAGACTACTCTCCAGCtgcaccagcgcattcacagaggagagaggtcgtatcactgctcacagtgtgggaagagttttaatcagCAGAGTCATCTCCAAGTCCAtgagcgcattcacacaggagagaagccgtataaCTGCACACAGTGTGGCAAGAGTTTCAATCAGCAGAGTGATCTTCAACGACAcaagcgcattcacacaggagagaagccatatcactgctcacagtgtggcaAGAGTTTCACTCAACAGAGTAATCTCCAAAAACATCAGCGTGTtcatacaggagagaagccttatcactgctcacagtgtgggaagagttttactcatCAGAACAATCTTCAaaaacaccagcgcattcacacaggagagaagccgtatcattGCTTACAGTGCGGAAAGAGTTTTACTCAACAGAATCATCTCCAActacaccagcgcattcacactggagagaagccTTATCACTGCTcccagtgtgggaagagttttagtCATCAAAGTACACTACAACGACACCAACGccttcacacaggagagaagccgtatcactgcttaAAGTGTGGGAAGAGATTTAATCAACAGAGTGATCTCCAACGACACGAGCGCATTTACACAGGAGAGAGGCCGTATCACTGCTCCCAGTGTGGGAAGAATTTTAATTAttctatttcatttaaaacccaTAAGTGCACTAACGCAGAGCCATAACATGATTTgaatttgtaaaattaaatatgattttatctTTACGGTTTGGGCTTAAATTATATGTTTaagtaatatttttgtattttatttatcctGACTTTCTATGAAATGTTACTgtaatgattaatatttttactttaatgtttgtttttgatcATAACATATTTTACAGCATAAAATTCGTAATGTCTGTGTAGGTGACTTAAGTGCAACACTATTGTTAGTGTAGTAACTACTACAGCATAAGACTAAAGCAGGGCTGGTTGAGAGCACATCCTGAAAGGAAGAATGGAAACAGTACCAACATCTCACCATCTTCAGCGAAACTCTTTATGCCAATGATCCCTTTCTTCTGCCCATTTGCATTAGAGGAAATCAGCTGTATGCTTTTTGGCAAGGCCTGGTTTATATTACTGCATTATAGTGTATTTGTGTCACAAGGCAGAGAAAGGGGTTTATGGGTAAGCATTGCATGCAGAGATGATTTTTACAGTTTGGTCCATAAGTAtatggacagtgacacaatctttgtaattttgcctctgtacaccaccacgttggatttgaaatgaaacagtcaATATGTGATTGATGTGTAGACTATCacctttaattcaaggggtttaacaaaaatattgcatcaaccatttaggaattacagccattttataCATCGTCCCcctcacaggctcaaaagtaa
>XM_034304274.1
GTAAAGCGCCCAGTCGCTGTTTCTCCAACCGCCAGAAACGCCCGAAGAAGAAAAAGGCTCCACAGCTTTCTCAGCTTTAGCCGACCGAGCTAATAAtcactttaaataatttttgacACAGGTTTGCAGTTGCAGTTCGATGGAGTTCAAAATAAAAGCACGTTATTGTGTCTATTACTGAGGATTTAAAACCCTGAGATGTTATAATGAGTTCAGCAGGAGACAGACAGCGCTCCTCCAGGAAGTCTCGGGCTCCTGATCCTGCTCCCTCACAGCTGTGTGAGGATGTGAAAACAGAGACTTCAGATGGAGGAACATTCGACGTGTCAGAAGTGAAGAAAGAGGAGACGCTGGAGCTGAACATCTACAACCATGGAGACGACGCTGACAACACACCTGAAGTTATCTCCATTAAAGAGGAAAATCCTGACAATAAAGACTACCTCTacTGTGAAATTTGCAAAtcttttttcttcaacaagtgTGAGGTTCACGGACTGCCTCTCTTCATCCCTGATACTCCTGTTCCCATGGGAGTCCCTGACCGAGCCAGACAAACTCTTCCTCCTGGACTAGAGATTCGGAAGTCCGGTATTCCTGACGCAGGCCTGGGAGTGTTTAATAAGGGGGAGACTGTTCCAGTAGGCGCACACTTCGGACCCTACCAGGGAGAGCTGGTAGACAGAGAGGAAGCCATGAACAGTGGATACTCTTGGGTGGTCTACAGGAGCGGGCAGTGTGAAGAATACATAGATGCCAAGAAAGAGATGCATGCGAATTGGATGAGGTATGTGAATTGTGCTCGTAATGATGAAGAGCAGAATCTTGTGGCTTTTCAGTATCGAGGGAGCATTCTGTATCGCTGCTGTCGACCCATTAACCCAGGACAGGAGCTCATGGTGTGGTATGAAGAGGAGTACGCTAAAGATCTCTGCCCTGCATTTGATTGCCTCTGGAACAAAAAGTGCTCTGCAGATGAAGACAATGCCCTGTTGCAAGTCTTCGCCTGCTGCTTGTGTCCACTGTCCTATACATCTCAAACTTACCTCCACAAACACATCTGGCGATGCCACTATGAAGAATACGTGAGACTTCAGGAATCAGGGGAGATTAAATATGAGATTCTGATTCCCACAAAAGGCTTCAGTCGTCAGCAAACATCATCTGGTACTCTCCATTCTGACACTTCTCACAATGATATACAGAAAGAAATTCATCACTGCTCAGACAGTGAAAAGAGTTTTACTCTTCAAGAACATCAGCGCATTCACAAaggagagaagccatatcacTGTTCTCAGTGTGATAAAAGTTTTACTGACCAAAGTAATCTCCGAAAacatcagcgcattcacactggagagaagccatatcactgctcacagtgtggaaaacGTTTTACTCAACAGGGTAATCTCCGCAAACATGAGCGTGTTCACACAGAAAAGAAGCCATAtcactgctcagagtgtggCAAGAGTTTCCATCAACAGACTACTCTCCAGCtgcaccagcgcattcacagaggagagaggtcgtatcactgctcacagtgtgggaagagttttaatcagCAGAGTCATCTCCAAGTCCAtgagcgcattcacacaggagagaagccgtataaCTGCACACAGTGTGGCAAGAGTTTCAATCAGCAGAGTGATCTTCAACGACAcaagcgcattcacacaggagagaagccatatcactgctcacagtgtggcaAGAGTTTCACTCAACAGAGTAATCTCCAAAAACATCAGCGTGTtcatacaggagagaagccttatcactgctcacagtgtgggaagagttttactcatCAGAACAATCTTCAaaaacaccagcgcattcacacaggagagaagccgtatcattGCTTACAGTGCGGAAAGAGTTTTACTCAACAGAATCATCTCCAActacaccagcgcattcacactggagagaagccTTATCACTGCTcccagtgtgggaagagttttagtCATCAAAGTACACTACAACGACACCAACGccttcacacaggagagaagccgtatcactgcttaAAGTGTGGGAAGAGATTTAATCAACAGAGTGATCTCCAACGACACGAGCGCATTTACACAGGAGAGAGGCCGTATCACTGCTCCCAGTGTGGGAAGAATTTTAATTAttctatttcatttaaaacccaTAAGTGCACTAACGCAGAGCCATAACATGATTTgaatttgtaaaattaaatatgattttatctTTACGGTTTGGGCTTAAATTATATGTTTaagtaatatttttgtattttatttatcctGACTTTCTATGAAATGTTACTgtaatgattaatatttttactttaatgtttgtttttgatcATAACATATTTTACAGCATAAAATTCGTAATGTCTGTGTAGGTGACTTAAGTGCAACACTATTGTTAGTGTAGTAACTACTACAGCATAAGACTAAAGCAGGGCTGGTTGAGAGCACATCCTGAAAGGAAGAATGGAAACAGTACCAACATCTCACCATCTTCAGCGAAACTCTTTATGCCAATGATCCCTTTCTTCTGCCCATTTGCATTAGAGGAAATCAGCTGTATGCTTTTTGGCAAGGCCTGGTTTATATTACTGCATTATAGTGTATTTGTGTCACAAGGCAGAGAAAGGGGTTTATGGGTAAGCATTGCATGCAGAGATGATTTTTACAGTTTGGTCCATAAGTAtatggacagtgacacaatctttgtaattttgcctctgtacaccaccacgttggatttgaaatgaaacagtcaATATGTGATTGATGTGTAGACTATCacctttaattcaaggggtttaacaaaaatattgcatcaaccatttaggaattacagccattttataCATCGTCCCcctcacaggctcaaaagt
>XM_034304275.1
AGTAAAGCGCCCAGTCGCTGTTTCTCCAACCGCCAGAAACGCCCGAAGAAGAAAAAGGCTCCACAGCTTTCTCAGCTTTAGCCGACCGAGCTAATAAtcactttaaataatttttgacACAGGTTTGCAGTTGCAGTTCGATGGAGTTCAAAATAAAAGCACGTTATTGTGTCTATTACTGAGGATTTAAAACCCTGAGATGTTATAATGAGTTCAGCAGGAGACAGACAGCGCTCCTCCAGGAAGTCTCGGGCTCCTGATCCTGCTCCCTCACAGCTGTGTGAGGATGTGAAAACAGAGACTTCAGATGGAGGAACATTCGACGTGTCAGAAGTGAAGAAAGAGGAGACGCTGGAGCTGAACATCTACAACCATGGAGACGACGCTGACAACACACCTGAAGTTATCTCCATTAAAGAGGAAAATCCTGACAATAAAGACTACCTCTacTGTGAAATTTGCAAAtcttttttcttcaacaagtgTGAGGTTCACGGACTGCCTCTCTTCATCCCTGATACTCCTGTTCCCATGGGAGTCCCTGACCGAGCCAGACAAACTCTTCCTCCTGGACTAGAGATTCGGAAGTCCGGTATTCCTGACGCAGGCCTGGGAGTGTTTAATAAGGGGGAGACTGTTCCAGTAGGCGCACACTTCGGACCCTACCAGGGAGAGCTGGTAGACAGAGAGGAAGCCATGAACAGTGGATACTCTTGGGTGGTCTACAGGAGCGGGCAGTGTGAAGAATACATAGATGCCAAGAAAGAGATGCATGCGAATTGGATGAGGTATGTGAATTGTGCTCGTAATGATGAAGAGCAGAATCTTGTGGCTTTTCAGTATCGAGGGAGCATTCTGTATCGCTGCTGTCGACCCATTAACCCAGGACAGGAGCTCATGGTGTGGTATGAAGAGGAGTACGCTAAAGATCTCTGCCCTGCATTTGATTGCCTCTGGAACAAAAAGTGCTCTGCAGATGACAATGCCCTGTTGCAAGTCTTCGCCTGCTGCTTGTGTCCACTGTCCTATACATCTCAAACTTACCTCCACAAACACATCTGGCGATGCCACTATGAAGAATACGTGAGACTTCAGGAATCAGGGGAGATTAAATATGAGATTCTGATTCCCACAAAAGGCTTCAGTCGTCAGCAAACATCATCTGGTACTCTCCATTCTGACACTTCTCACAATGATATACAGAAAGAAATTCATCACTGCTCAGACAGTGAAAAGAGTTTTACTCTTCAAGAACATCAGCGCATTCACAAaggagagaagccatatcacTGTTCTCAGTGTGATAAAAGTTTTACTGACCAAAGTAATCTCCGAAAacatcagcgcattcacactggagagaagccatatcactgctcacagtgtggaaaacGTTTTACTCAACAGGGTAATCTCCGCAAACATGAGCGTGTTCACACAGAAAAGAAGCCATAtcactgctcagagtgtggCAAGAGTTTCCATCAACAGACTACTCTCCAGCtgcaccagcgcattcacagaggagagaggtcgtatcactgctcacagtgtgggaagagttttaatcagCAGAGTCATCTCCAAGTCCAtgagcgcattcacacaggagagaagccgtataaCTGCACACAGTGTGGCAAGAGTTTCAATCAGCAGAGTGATCTTCAACGACAcaagcgcattcacacaggagagaagccatatcactgctcacagtgtggcaAGAGTTTCACTCAACAGAGTAATCTCCAAAAACATCAGCGTGTtcatacaggagagaagccttatcactgctcacagtgtgggaagagttttactcatCAGAACAATCTTCAaaaacaccagcgcattcacacaggagagaagccgtatcattGCTTACAGTGCGGAAAGAGTTTTACTCAACAGAATCATCTCCAActacaccagcgcattcacactggagagaagccTTATCACTGCTcccagtgtgggaagagttttagtCATCAAAGTACACTACAACGACACCAACGccttcacacaggagagaagccgtatcactgcttaAAGTGTGGGAAGAGATTTAATCAACAGAGTGATCTCCAACGACACGAGCGCATTTACACAGGAGAGAGGCCGTATCACTGCTCCCAGTGTGGGAAGAATTTTAATTAttctatttcatttaaaacccaTAAGTGCACTAACGCAGAGCCATAACATGATTTgaatttgtaaaattaaatatgattttatctTTACGGTTTGGGCTTAAATTATATGTTTaagtaatatttttgtattttatttatcctGACTTTCTATGAAATGTTACTgtaatgattaatatttttactttaatgtttgtttttgatcATAACATATTTTACAGCATAAAATTCGTAATGTCTGTGTAGGTGACTTAAGTGCAACACTATTGTTAGTGTAGTAACTACTACAGCATAAGACTAAAGCAGGGCTGGTTGAGAGCACATCCTGAAAGGAAGAATGGAAACAGTACCAACATCTCACCATCTTCAGCGAAACTCTTTATGCCAATGATCCCTTTCTTCTGCCCATTTGCATTAGAGGAAATCAGCTGTATGCTTTTTGGCAAGGCCTGGTTTATATTACTGCATTATAGTGTATTTGTGTCACAAGGCAGAGAAAGGGGTTTATGGGTAAGCATTGCATGCAGAGATGATTTTTACAGTTTGGTCCATAAGTAtatggacagtgacacaatctttgtaattttgcctctgtacaccaccacgttggatttgaaatgaaacagtcaATATGTGATTGATGTGTAGACTATCacctttaattcaaggggtttaacaaaaatattgcatcaaccatttaggaattacagccattttataCATCGTCCCcctcacaggctcaaaagta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910531.2 False 2673 mRNA 0.43 6 96182 105382
XM_034304274.1 True 2905 mRNA 0.43 7 96184 106079
XM_034304275.1 False 2904 mRNA 0.43 7 96183 106080

Neighbor

gene id symbol gene type direction distance location
LOC113524368 NA coding upstream 6099 112179 ~ 125540 (-)
LOC113524367 LOC108266218 coding upstream 30754 136834 ~ 156279 (-)
LOC117597326 LOC108266219,LOC108266898,LOC108266218,LOC108266876,LOC108258194 coding upstream 32858 138938 ~ 141293 (-)
LOC113524366 LOC108261406,LOC108270753 coding upstream 58670 164750 ~ 174359 (-)
edar edar coding upstream 126495 232575 ~ 257446 (-)
LOC117597330 NA non-coding downstream 10261 83870 ~ 85921 (-)
G75037 NA non-coding downstream 32894 62798 ~ 63288 (-)
G74827 NA non-coding downstream 50313 44484 ~ 45869 (-)
G74822 NA non-coding downstream 60739 35050 ~ 35443 (-)
G74818 h2afx,LOC106534936,LOC107386469,LOC104950138,LOC106516344,LOC106527800,LOC100693699,LOC105929328,LOC107677420 non-coding downstream 69286 13659 ~ 26896 (-)
G75183 NA non-coding upstream 310657 416737 ~ 417747 (-)
G75195 NA non-coding upstream 325439 431519 ~ 434836 (-)
G75201 NA non-coding upstream 374988 481068 ~ 481964 (-)
G75240 NA non-coding upstream 455273 561353 ~ 561963 (-)
G75332 NA non-coding upstream 524364 630444 ~ 701572 (-)
G74824 LOC108263794,LOC108263798 other downstream 51836 43731 ~ 44346 (-)
G74815 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107723971 other downstream 64143 18934 ~ 32039 (-)
G75076 NA other upstream 56134 162214 ~ 162577 (-)
nms pdcl3,nms other upstream 88951 195031 ~ 201012 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other upstream 217383 323463 ~ 330490 (-)
LOC113524348 LOC108266920 other upstream 266487 372567 ~ 374644 (-)
tmsb4x NA other upstream 585000 691080 ~ 719115 (-)

Expression


Co-expression Network