LOC113524329


Basic Information

Item Value
gene id LOC113524329
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1103040 ~ 1112551 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910536.2
TCTGCTTTGGTGGAGTCAGACATGATGTCTGATGCAGATGTCACACAGACTGACAGCGCTGTCACTGAGGATTCTCTGACCGAGGCTGAGGAGAGGAATCAGAAGGACGTGGGGTCCAGTGCTCCGGTGGACAAGGAGAAGTCCAACCTGGAGGACAGAGTGAGGGAGTTGGAGGAACTGCTctgtgagacacacagagagtgtgAGATAAAAACCAAGGAGTGTGAGCGAGAGCGGGAGGCTCACAGTATCCTGAAGTTGAAGTATGATCAGATGACAGAAACTTTAGCGCACAAGGAGGAATCACTAAAGGTCTCTCTGGCTGATGCTGAGGAGAAATACAAGCTGGTGATCGAGTCCTGTGCTCAGCTGGAGTCTGACCTGATGTCCCAGGTGAACACACTGAAAGCCTCAGTGCAGCACCATGTGGAAGAACTCCTTGAGACACACAGGAAGTGTGACGAGATAACATCGGAGTATGAGCAGGAGCGAGAGGCCCACAGTATCATGAAGTCACAGTACGAACTGATGAGGGAAACTGTAAAACAGTGCGATGAGTTACTGAAAGAGTGTGAGCAAGAGTGCAAAGCTCATAGTATCCTGAAGTCAGAGTACAATCAGATTCAGGAAACTTTAACCCACGATGAGGAGTCACTAAACAACTTCCAGGTCTCTCTGGCTGAAGCTGAGAGGAAATATGAGAAGGCGATGAACATCAATGCTCAGCTGGTGAACGAGAACTCCAAACTGATATCCGATATAGACTTACTGCAAGGCtcaatgcagcagcaagaggaAGAGCTCAATGAGGCATACAGGAAGTGTggcatgatgatgatgGAGTATGAGCAGGAGCGGGAAGCTCGCAGTATCATGAAGTCACAGTACGAAGCGATGAAGGAATCTGTAAAATGGTGCGAAAAGTTACTAAACGACTTTAAGCAAGAGCAGGAGGCTCACAGTATCCTTAAGTCACAGTATGAAGAGATGACAGAAACTATAACACACAGAGAGGAGTCACTTAAAAACTTGCAGGTCGCTCTGGCTGAAGCTGAGAGGAAATACAAGCAGGCGATGGAGTCCAGTGCTCAGCTAGAGAAAGAGAACACCCACCTGATATCCGACTCGGACATACTGCAAGACTGTGTGCATGAGTTGGAGGAAAAGCTCTTTAAGATCCGGCGCAAGCATGATAAGTTAGCAAAGGATCGTCAGCAGGCAGGGAAGGCTTACAGCATCCTGCAGTCACAATACGAAGAAACATTAAAACAGCGTGACGAGTTACTAAAGgagtgtgagtgtgagcggGAGGCTCACAATATCCTGAAGACACAGTACAATCAGTTGAAGCAAACTTTTACCCACAATGAGGAGTCACTGAAGGAGGAGAAATACGAGCCAGTGATGGAGTCCAGTGCTCAGCTGGAGTCTGACCTAATGTCCCAGGTGAACACACTGCAAGCCTCAGTGCAGCAGCTGGAGGAAGAGCTCCTTGAGACACGCAGGAAATGTGACGAGATAACGACAgagagggagaaagagcaGGAGGTTCACAGTTTCCTGAATTTGCAGTACCAAGAGATGAGGGAAACTTTAAAACAGTGCAGTGAGTTACTAAAAAACCATCGCATAGCTCTTGGATCTGAGGAGCCTGTGGATCTGTGAACCCCAGGTACCTGCCAGTGGTGGTGTTTAACACCTGGATATCTTCTCATGCATGTGCGCGTATGACCTTTACCACAAAGTCATATGATGATGTACTACTTACTATAACTCGATGTAATAGTCACTATGGTTTCTGTAACCTACTGGCCAAGTGCCTACTAGCATTCTCTTTCACCCCTTCGTGATGTCGGTCCAACCAGCAGCCCCTGCACTTCACTGCCGGGCTCTGTGCAGTTTTCTCAATGTGGGTAGTGGGGGGGACTGGCACCATTTAGGGTGATTCACAGGGCGGATCAAGGGTGCTTGGGTGTTTGTTAGGGCCCTGGGAGCTCAGTTCTAATCACCTGTAACCCCGAGGTGGCCTGTCGGCCTGGGATCAATTCTGAAGCCTGGGTTCACTTCTCCAGGGTCTTGGGCCCAAAGACCAGTCCAGGAACGCAGCGCAAACTGTGTAGGGCCATTTTTTTGGGCAGTCATCACTATGTCTGCACTTGATATTGGGACAGCAGACATCAGAACATAATGGTGAAAGCACCAGCGATGAGATTCAGGGGTCCACCGGAGGCATGCGGTCCAGACTGAGCCCATCAGCTCTTATTAGCTAAGGATCTCACCACGGGGCAACTGTTAGCCTTGAAGCTTAGTGGTATCTGTGAGTTGCTTGATGCTGAACACTTACCAAATGCTGCCAGAGCCAATGATGAAAAGTGTTGCTTGGTTATTGGTTCATTTCCTGGTTAAAAATATTCCGGATGCAGTGGCAGACATACCGTCCTTGTGAGCTTCAGTTGAGCGCCACTCGGGGGGCTCGAACCTAGGGCTATCAGGAGGGCTTTATAGTAGTGGCTGAGCCACTGTTATTCAATGGAGGGAGTACATTCTGATCTATTAGTGCTGTTAGCTTCAGTCGTGTGAGGGGAAATTGGAGGAGAACACCACTCTAATCCCTTAGAGCTGTTGCAGCCAAGTGGGTGGGCCAATGGATGTTATTCGTAGGGGAACAAGAAAAACAATGTTTATGTTAGGTAATAACAGTAAGTACTGCATCATTGTTGTCTTATAACTTTGTGATAAAGGTCTTGGCTTATATGCACAAGAGAATATCCAGGTGTTAATCATACTGCCCCTGGTGGTAAGGAGGGGTGAAATGGAAGTACCACTAACATGCAGGTGCTCACGATAAAGGATGGATGCAATAAACACTCGATTTTATCAAATCTGCACTAGTTTCATCATCTTTGACAGAATTATTGAACttattacattaattttttaatcagCACATTCTTCTGTTAGACCACTTAATATTACTGCGTTAAATATTTTGGCTTACAAGACAGCTACAAGTTACTATTGATTTCAGCCATCCAAAATTTCTGAAGTTTCACTGCATCGTATGTGAAGTATAGAGAGAGATCCATGATATTGTCCACAATTCCACAACATGGAGGAGTTTATCTCCTTCGTTTTTAAAACTTTCCCTGGAGCACACAGTGTAGTCCTGCTCTTTTACACCATTCCTATAGCACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910536.2 True 3196 mRNA 0.47 15 1103040 1112551

Neighbor

gene id symbol gene type direction distance location
LOC113524324 LOC108266872,LOC108260750 coding downstream 145302 944319 ~ 957738 (-)
dct dct coding downstream 269148 827281 ~ 833892 (-)
tlr7 tlr7,LOC108266215 coding downstream 373992 725511 ~ 729048 (-)
LOC113524316 LOC108272333 coding downstream 378628 720627 ~ 724412 (-)
arsh LOC108266883 coding downstream 417562 675519 ~ 685478 (-)
trnas-uga_4 NA coding upstream 117758 1230309 ~ 1230390 (-)
trnal-cag_10 NA coding upstream 118036 1230587 ~ 1230669 (-)
trnaw-cca NA coding upstream 140372 1252923 ~ 1252994 (-)
trnal-caa_1 NA coding upstream 145591 1258142 ~ 1258256 (-)
ints6 ints6,LOC107567782,LOC107695579,LOC107725253,LOC107685346 coding upstream 158856 1271407 ~ 1282002 (-)
G75600 NA non-coding downstream 21634 1081207 ~ 1081406 (-)
G75599 NA non-coding downstream 22685 1079923 ~ 1080355 (-)
G75428 NA non-coding downstream 173683 929147 ~ 929357 (-)
G75429 NA non-coding downstream 174074 927859 ~ 928966 (-)
G75348 NA non-coding downstream 210983 796822 ~ 892057 (-)
G75628 NA non-coding upstream 23075 1135626 ~ 1140203 (-)
G75640 NA non-coding upstream 56908 1169459 ~ 1169693 (-)
G75636 NA non-coding upstream 96834 1209385 ~ 1215704 (-)
G75663 NA non-coding upstream 124670 1237221 ~ 1254096 (-)
G75687 NA non-coding upstream 193438 1305989 ~ 1306353 (-)
LOC113524372 NA other downstream 164837 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 166072 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 238433 858404 ~ 864607 (-)
frmpd4 frmpd4 other downstream 337049 729592 ~ 765991 (-)
tmsb4x NA other downstream 383925 691080 ~ 719115 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other upstream 32746 1145297 ~ 1159338 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other upstream 58158 1170709 ~ 1187499 (-)
trnat-agu_4 NA other upstream 335640 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 358938 1471489 ~ 1471561 (-)
G75770 NA other upstream 416519 1529070 ~ 1529513 (-)

Expression


Co-expression Network