dct (dct)


Basic Information

Item Value
gene id dct
gene name dct
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 827281 ~ 833892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910542.2
AAtccgagcacacacacacacacacacacacacacacatactgaagtggagttttttttatttccacacaCTCTGTTGAGTCTGTCTCTGTAAGGacaggaggatgaggaggatggtgCTGATGATGAAGGCCCTGGCGTGCTGGTGCGTGCTTTGCGCGGTGGTGCGCGGAGTCCGGGCGCAGTTTCCGCGCGCGTGCAGCACGGTGGAGGCGATCGAGTCGAAGCGCTGCTGCCCGTCCCCGAGCGCCGATGCCGAGGACGCGTGCGGCGCGCGCTCCGGACGCGGGGCCTGCGACGCCGTGCACACGGACACGCGGCCGTGGGGAGGAACGTACACGCTGCGCAACGTGGACGACCGCGAGCGCTGGCCCACCAAGTTCTACACGCAGACCTGCACGTGCTTCGGTAACTTCGCCGGTTACGACTGTGGCGAGTGTAAGTTTGGGTGGACGGGGCCGAACTGCGACGTCCGCAAGACTCCTGTGACACGGAAGAATATCATGTCTCTGAGTGTGGAGGAGAGGCAGATCTTCCTGGAGGTGCTGCAGCGTTCCAAACGCACCATACACCCTCAGTACGTCATCGCCACCGAGCACTGGCTCGGCCTGATCGATCGAGAAACCAACCAGACGCGCTTCAGCAACATCACCGTGTACGACCTGTTCGTCTGGCAGCACTACTACTCCGTGAGGGACACGCTGCTCGGTCCCGGACGGCCGTTCAAAGCCATCGATTTTTCCCATAAAGGCCCTGCGTTCATCACCTGGCACAGGTACCATCTGCTGAGTCTGGAGAGAGACCTTCAGaAACTGATTGGCGATCAAAATTTTGCTATCCCTTACTGGAATTTTGCAACCGGTGCTCAGGAGTGTGAAGTGTGCACTGATGACCTTTTGGGAGGAGAAGACCCCAGTGACCCCTCACTCATCAGCCCTAGATCACCGTTCAGTGACTGGGGAATCGTGTGTGACAGCTTGGACGAGTATAACCGTTTGGTGACGCTGTGTAACGGGACGAGAGAGGGACCTTTACGTCGCGGTCCGAAGAAAAGAGGCAGCATTGCTTTGCCGACGATGGACGACGTACGCAGCTGCCTCCAGTTACGAGACTTCGACAGGCCTCCATATTTTACCAACTCCACCTTCAGCTTCAGAAACGCACTGGAGGGTTTCGATAAAGCGGACGGAGAACTCGACAGTGCTGTGACGGGATTACACAACCTCGTCCACGACTTCCTCAGCGGCACAAACGCACTGTCCCACTCCGCCGCCAACGACCCCATCTTTGTGGTGTTACACGCCTTCACAGACGCCATATTTGAAGAATGGCTGCGCCGCTTCCCAAAAAACGATACTTATCCCGAAGAAATGGCTCCGATCGGCCATAACCGCCATTTTAACATGGTTCCCTTCTTCCCTCCGGTCACGAACGAGGAACTCTACATTCCCTCCGTCGAACTGGGCTACTCCTACGAGATCGACCTCTCCGatgCAGGTCAGTCCGCAGCCGCATTCGTTGTTGCCGGTTCCTGCCTCGCTCTCctcgtcctcatcctccttTTGGTTCTGTACACACGGCAGAGACACAGGCGCGAGTACGAGCCGCTCGTCAGCGCTGGATATGCAGCTGTGAAATACACCGAGGACGCGTGATTGAAAACGAAATTAAAAACTAGCGTGAACATTACTGCAGAAGACATTGCCGCAGTCTgatccatttttcttttccaaagtAGCAAAATAAGACtaacatgctagctaacatgtcTCATGCTAGCTAATTATCACACTATTCCTGGCGCTAATCTCACACTAACATTATGCTAATGTTACGCTAACTCCAGCCTAACTGCTTTAGCTCGTCTGCATGCTAGTTCTTAGAAGCGGATTTTTTTGGACACGAGTCTAATTCAGGAAGGTCATAAAAATGTGAATCATATTTacaagtgattaaaaatgtagaatGTAGTACctcattttgatttatttaccttctaaatgtttttttttttcattttagcacACGACAGTAATTCATAAgccattttgtttactttttattttgcttgttaaaggtgcagtctgtgATTTTGACAAATTGTTTCTACACTTGAATTAATCATATTGTGATTAACACCACCAATGTGCAGCCAATCTCACTGGATTCTGTGAATTTCagctttatatttacatttttttctgttaattaatgTCACAATGACGAGTGTGTGCTACATCAGTTGCTAATTATTAAACTTTGGTTACTCCATAAACTGCTCTATGACTCTGACTCCACTTTTTTGCATGGTCGTAGTACGTTATTAATGAGTAAATAATTCAATCAGCTAATGTTACTGTAACTAGCAATTTTACGAGtggtctaaat

Function

symbol description
dct Predicted to enable dopachrome isomerase activity. Predicted to be involved in developmental pigmentation; generation of neurons; and melanin biosynthetic process from tyrosine. Predicted to act upstream of or within melanin biosynthetic process. Predicted to be located in melanosome membrane. Predicted to be integral component of membrane. Predicted to be active in melanosome. Is expressed in several structures, including eye; female organism; immature eye; integument; and neural crest. Human ortholog(s) of this gene implicated in oculocutaneous albinism. Orthologous to human DCT (dopachrome tautomerase).

NR:

description
PREDICTED: L-dopachrome tautomerase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K01827 DCT; dopachrome tautomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910542.2 True 2387 mRNA 0.50 9 827281 833892

Neighbor

gene id symbol gene type direction distance location
tlr7 tlr7,LOC108266215 coding downstream 98233 725511 ~ 729048 (-)
LOC113524316 LOC108272333 coding downstream 102869 720627 ~ 724412 (-)
arsh LOC108266883 coding downstream 141803 675519 ~ 685478 (-)
fancb fancb coding downstream 326074 490480 ~ 501207 (-)
gpm6bb gpm6b,LOC108414227,LOC105898107,LOC103023481,LOC100694635 coding downstream 368598 433287 ~ 458683 (-)
LOC113524324 LOC108266872,LOC108260750 coding upstream 110427 944319 ~ 957738 (-)
LOC113524329 NA coding upstream 269148 1103040 ~ 1112551 (-)
trnas-uga_4 NA coding upstream 396417 1230309 ~ 1230390 (-)
trnal-cag_10 NA coding upstream 396695 1230587 ~ 1230669 (-)
trnaw-cca NA coding upstream 419031 1252923 ~ 1252994 (-)
G75372 NA non-coding downstream 54851 767361 ~ 772430 (-)
G75369 NA non-coding downstream 62726 764295 ~ 764555 (-)
G75365 NA non-coding downstream 66443 760352 ~ 760838 (-)
G75356 NA non-coding downstream 106675 719505 ~ 720606 (-)
G75332 NA non-coding downstream 125709 630444 ~ 701572 (-)
G75429 NA non-coding upstream 93967 927859 ~ 928966 (-)
G75428 NA non-coding upstream 95255 929147 ~ 929357 (-)
G75599 NA non-coding upstream 246031 1079923 ~ 1080355 (-)
G75600 NA non-coding upstream 247315 1081207 ~ 1081406 (-)
G75628 NA non-coding upstream 301734 1135626 ~ 1140203 (-)
frmpd4 frmpd4 other downstream 61290 729592 ~ 765991 (-)
tmsb4x NA other downstream 108166 691080 ~ 719115 (-)
LOC113524348 LOC108266920 other downstream 452637 372567 ~ 374644 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other downstream 496791 323463 ~ 330490 (-)
nms pdcl3,nms other downstream 626269 195031 ~ 201012 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other upstream 24512 858404 ~ 864607 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other upstream 86004 919896 ~ 936968 (-)
LOC113524372 NA other upstream 104120 938012 ~ 938203 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other upstream 311405 1145297 ~ 1159338 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other upstream 336817 1170709 ~ 1187499 (-)

Expression


Co-expression Network