esd (esd,LOC107675365,LOC107601075,LOC107709410)


Basic Information

Item Value
gene id esd
gene name esd,LOC107675365,LOC107601075,LOC107709410
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1396684 ~ 1404791 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910995.2
GACGTCATGACGTCGTGACGTCAGTGGCGACCTCTGAACCTCGCTGACACCAGCGAAGAGCTGAAGAAGTGAAGAGCTGCTCTTTCCAGGGCTTCATTAAAAACACCAAGACCACCAACACCACAAAGCTAGCCATGGCCTTAACGCAGGTGTCATCCAACAAGTGCTGTGGTGGATACCAGAAAGTGTTTGAGCATGacagCTCTGAACTAAAGTGCAAGATGAAATTTGCCATCTACCTTCCTCCTAAGGCTGAAAGTGGAAAATGCCCTGTGCTGTACTGGCTCTctgGACTAACATGCACTGAGCAGAATTTCATCACCAAAGCAGGATGCCCGGCTGCTTCCGAGCATGGCATCATCGTTGTCGCCCCGGATACAAGCCCACGCGGCTGCAATATTGAAGGAGAAGACGAAAGCTGGGATTTTGGAACAGGAGCCGGTTTCTATGTTGATGCTACGCAGGAGCCATGGAAGACCAACTATCGCATGTACTCTTATGTCACCGAAGAGCTGCCACGTTTAATAAACTCTAATTTCCCTGTGGATCCGGAGAAGATGTCCATCTCGGGGCATTCTATGGGTGGCCACGGCGCTCTCATCTGTGCACTGAAGAATCCTGGGAAATACAAGgctgTTTCCGCTTTTGCCCCAATCTGTAACCCAATGCAGTGTGCTTGGGGACAAAAGGCTTTTTCCGGCTACCTGGGACCTGAAAAATCCACCTGGGAGGCGTATGATGCCACAGTATTGGCTGCCTCATACTCGGGTCCGGAATTGGATATTTTGATTGACCAGGGCCGTGACGACCAGTTTCTGTCGGCCAGTCAGCTGCTTCCTGATAACCTGATCGCCGCCTGCTCCGAGAAGAAAATCCCCGTCGTGTTTCGACTTCAGCAGGGCTATGACCACAGCTATTACTTTGTGTTCTCGTTCGTCGAGGACCACATCAAGCACCATGCAAAGTATCTGAACGCATAAGACAGACCAGAAAAACAACCATGCGGTCCTTTCATCACCACCTTTTCACAACTCAaagcaacaataaaataaaaattatgtaGTGATGTGA

Function

symbol description
esd Predicted to enable S-formylglutathione hydrolase activity. Predicted to act upstream of or within formaldehyde catabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in female organism; intestinal bulb; and liver. Orthologous to human ESD (esterase D).

NR:

description
S-formylglutathione hydrolase-like

GO:

id name namespace
GO:0046294 formaldehyde catabolic process biological_process
GO:0018738 S-formylglutathione hydrolase activity molecular_function

KEGG:

id description
K01070 frmB, ESD, fghA; S-formylglutathione hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910995.2 True 1071 mRNA 0.50 10 1396684 1404791

Neighbor

gene id symbol gene type direction distance location
rubcnl rubcnl coding downstream 57462 1320263 ~ 1339222 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC106511784 coding downstream 81351 1306954 ~ 1315333 (-)
trnal-caa_2 NA coding downstream 82258 1314314 ~ 1314426 (-)
trnan-guu_16 NA coding downstream 100914 1295696 ~ 1295770 (-)
trnat-agu_2 NA coding downstream 102740 1293871 ~ 1293944 (-)
trnaw-cca_4 NA coding upstream 9877 1414668 ~ 1414739 (-)
si:dkey-230p4.1 LOC108271988 coding upstream 125034 1529825 ~ 1552435 (-)
LOC113524666 LOC108271633 coding upstream 150151 1554942 ~ 1566787 (-)
trnal-caa_7 NA coding upstream 163954 1568745 ~ 1568857 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027 coding upstream 211109 1615900 ~ 1624049 (-)
G75734 NA non-coding downstream 162 1396297 ~ 1396522 (-)
G75732 NA non-coding downstream 1546 1392779 ~ 1395138 (-)
G75727 NA non-coding downstream 11162 1384858 ~ 1385522 (-)
G75719 NA non-coding downstream 19495 1375386 ~ 1377189 (-)
G75713 NA non-coding downstream 29618 1366382 ~ 1367066 (-)
G75736 NA non-coding upstream 9051 1413842 ~ 1414177 (-)
G75737 NA non-coding upstream 28231 1433022 ~ 1433227 (-)
G75739 NA non-coding upstream 50208 1454999 ~ 1455287 (-)
G75740 NA non-coding upstream 62871 1467662 ~ 1467899 (-)
G75814 NA non-coding upstream 251582 1656373 ~ 1656848 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 209185 1170709 ~ 1187499 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 237346 1145297 ~ 1159338 (-)
LOC113524372 NA other downstream 458481 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 459716 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 532077 858404 ~ 864607 (-)
trnat-agu_4 NA other upstream 43400 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 66698 1471489 ~ 1471561 (-)
G75770 NA other upstream 124279 1529070 ~ 1529513 (-)
htr2aa NA other upstream 187164 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 233594 1638385 ~ 1638458 (-)

Expression


Co-expression Network