med4 (med4,LOC107673119,LOC107709409,LOC107724027)


Basic Information

Item Value
gene id med4
gene name med4,LOC107673119,LOC107709409,LOC107724027
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1615900 ~ 1624049 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911002.2
GTGGCGGTACTGCACCCTAAGCGGCTCTGACAACCTCCATAAACAATacagaagaaggaaggaaatgcaACATGGCGGCCGACAAATCGACTAAAGAGAAGCTGTTGTCCACTCTGAATGATATAGAAGTGTTGTCCAGGGAACTGATAGAGATGCTTGCGTTGTCTCGAAGCCAGAAACTTCCCCAGCCTGGAGAGGATACTCAGGTGCTGGAGCTGCTGGTGCAGAGGGACAAAGAATTCCAGGAGCTGATGAGGACAGCCTTGAGGCAGGGCAGGACTCACGAGGAGATGCAGAAGCTGGAGAAAGAAGTAGAGAAGAGGGATGGTGACATCCAGCTGCTGCAGAAGCAGCTTAAGGAGGCAGAGCACATCCTGgcCACTGCTGTGTACCAGGCCAAAGAGAAACTCAAATCCATCGAGAAGGCCAGAAAAGGAAGCATCTCTTCAGAGGAAATTATAAAGTACGCACACAGGATAAGTGCCAGTAATGCAGTGTGTGCTCCTCTGAACTGGGTCCCAGgtgacccACGGAGGCCCTATCCCACTGACCTTGAGATGCGCAGTGGAATGCTGGGTCATATGTGTAACCTGCCCACCAATGGCGTGAACGGCCACCTCCCTGGTGATGCACTGGCTGCTGGGAGATTACCAGATGTGCTGGCCCCTCAGTACCCATGGCAGTCTGCAGATGTTGCCATGGCGATGCCTCCACCACCTCACCATGGTAACGACCTCAGCTTGGAGTTGCCGGGGCACAATAAGGAGAATGAGGACGACGTGGAGGCCATGAGCACCGACTCGTCCAGTAGCAGCAGTGATTCTGACTGAGAGTGAgtgcgtgagtgagtgagtgagtgagtgagacaaTATGAATAGTATTGTAAGTAAGAACAGAATTCTCCAAAAGGACTTAGTGTGCGAGATATCTTAATACAAAAGTCTCCAAAAACGAATTttgatcaaaaaaataaaaaaaaaagttaaggtTATTATTAACGTCATTCCTTCCACATTGCTAAAACCAACCTGACCTCAGCCAGCTGAAAATATCTCATGATAACCAATCTAAAACAATTTAACAGTGTAATTTGTTGCCTGTTCACCTCTAGAGACAAAGAGCTTCTGAGAATTCAGTAATATTTTAGTACCTTATGAACACTTGCTTCATTATCTCTCGTCTGAATCCTTTTGGCTTAGTGTGATGGACTTGGATGGTAATTTAGCATACTGTAAGCTCATGTAGAAATGCTGCAAACCTTTCATGTAACCCAGCAGTTGTGTAAATAGAGCTGTAAAAATGTTTGGGTTTCAGACCTTGTAAATAAAGTTTCTT

Function

symbol description
med4 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex. Orthologous to human MED4 (mediator complex subunit 4).

NR:

description
mediator of RNA polymerase II transcription subunit 4

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15146 MED4; mediator of RNA polymerase II transcription subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911002.2 True 1335 mRNA 0.47 7 1615900 1624049

Neighbor

gene id symbol gene type direction distance location
trnal-caa_7 NA coding downstream 47043 1568745 ~ 1568857 (-)
LOC113524666 LOC108271633 coding downstream 49113 1554942 ~ 1566787 (-)
si:dkey-230p4.1 LOC108271988 coding downstream 63465 1529825 ~ 1552435 (-)
trnaw-cca_4 NA coding downstream 201161 1414668 ~ 1414739 (-)
esd esd,LOC107675365,LOC107601075,LOC107709410 coding downstream 211109 1396684 ~ 1404791 (-)
mlphb LOC108261129 coding upstream 99208 1723257 ~ 1747031 (-)
cops8 cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920 coding upstream 234213 1858262 ~ 1871493 (-)
trim63b trim63b,LOC100194566,LOC100505419 coding upstream 238104 1862153 ~ 1863790 (-)
ranbp2 LOC108261082,LOC108440489 coding upstream 326083 1950132 ~ 1986039 (-)
lims2 LOC108261084,LOC108440488,LOC105898085 coding upstream 364491 1988540 ~ 1998073 (-)
G75740 NA non-coding downstream 148001 1467662 ~ 1467899 (-)
G75739 NA non-coding downstream 160613 1454999 ~ 1455287 (-)
G75737 NA non-coding downstream 182673 1433022 ~ 1433227 (-)
G75736 NA non-coding downstream 201723 1413842 ~ 1414177 (-)
G75734 NA non-coding downstream 219378 1396297 ~ 1396522 (-)
G75814 NA non-coding upstream 32324 1656373 ~ 1656848 (-)
G75875 NA non-coding upstream 98532 1722581 ~ 1722799 (-)
G75889 col6a3,LOC108262369 non-coding upstream 177223 1801272 ~ 1819183 (-)
G75880 NA non-coding upstream 225188 1849237 ~ 1873669 (-)
G75925 NA non-coding upstream 287147 1911196 ~ 1917438 (-)
htr2aa NA other downstream 19421 1591955 ~ 1596479 (-)
G75770 NA other downstream 86387 1529070 ~ 1529513 (-)
trnak-uuu_2 NA other downstream 144339 1471489 ~ 1471561 (-)
trnat-agu_4 NA other downstream 167636 1448191 ~ 1448264 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 428401 1170709 ~ 1187499 (-)
trnat-agu_6 NA other upstream 14336 1638385 ~ 1638458 (-)
trnar-ucu_5 NA other upstream 14714 1638763 ~ 1638852 (-)
trnat-agu_7 NA other upstream 26004 1650053 ~ 1650126 (-)
trnar-ucu_6 NA other upstream 38471 1662520 ~ 1662609 (-)
trnat-agu_8 NA other upstream 50063 1674112 ~ 1674185 (-)

Expression


Co-expression Network