LOC113524666 (LOC108271633)


Basic Information

Item Value
gene id LOC113524666
gene name LOC108271633
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1554942 ~ 1566787 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911013.2
AAGGTTGAAGCTTTGTCTCCCCTACACACCTGACTAGACTAATCAGCTCATTAACACACCTTTCTTGAGGATGCTGGAATTCCTCCGCAGTGCATGGAGCAAAAACGAGGGCAAAACGAGGGTATTCAGAGGAGTTTCTGTATCCAGATGAGATGAATCCAATGGACAAGATACTTGTAGCAAACATTGggATGTCGCGTTTTCGGGGCTATGCCGTTCGAGAAGGTGACATCGCGAGTTCTGGTGTGAGGAGCGCCATTTCATGTCCAAACCAAAACTGCCTCTGGCCAAAATCGGTGGATGGATTTGTTTACGTTCCTTACACCATCTCTCCTCTCTATGaTAATATGGACCGGATCACAATCGAGATGGGAATGCTGGACATCTCATCTGCAACGTGTGTGAAATTTGTGCCACGTACGCATCAAGCTGACTTCGTCGATATCCAGCCTAGATTTGGGTGCTGGTCATTCTTGGGCAGGGTGGGAGGACCACAGCCACTCTCACTGCAGACTCCGGCGTGCATGTGGTCAGGCGTGGCATCTcatgagctcatgcatgtgcTCGGCTTCGTTCACGAGCAGTCACGCTCTGATCGCGACCGCTACGTCACCATCCTGTGGGAAAACATCATCGAGGGTCAAAGGCACAACTTTAAAAAGTACGAGACGAACAATTTAAACACCGTATATGATTATGACTCTGTGATGCACTACGGGAGATATGCTTTCTCAGAAGATGGATTACCAACTATCATCCCTAAACCAGATCCGAACATTCCTATTGGCCAGCGTGATGGACCGAGCCGACTAGATATTCACAAAATAAATCtgctgtacaactgtgGTGGCCTCGTCTGAACAGAAGCTCTGGGATAAAACTTGAAGTCACTTTATTAAAGTAGCAGCTCAGTCACTATTATTGTATATTCCAGGCTATAAgtcactttttattttgcactgtaGCAGATATTGCAACTTAGAATGCaaagctttttaaattttttttacacatccaACCAATTCATGACTTATTAtcacatttgttaaaaaaagcacaacttctgcagcaaaatatttttaataaataaatatttctactATATCAATGCATAGTTGCAAAAGCTTttccaaaagcttcagcttATGCGTCTTGAAGTAGTTCATGGTGGTGGATTTtgaggcatgtttttggatcattgtccttgTTGTGAATCTCTTTTTAGCTTGACGATATCAAATTTGCTTCcagaatttgctgatatttactggaATCTATTTTTCCATCTACCTGTGCAATGTTTTTTGTGCCACTTGCTGCCACATAACCCCAGTGAATAATAGATCCAGCCCATGCGTAACAGCTGGCGAAGTGCTCTTTTCATTAATTACTGCTCTTATTTTCAACAAACACTGTATTGCATACACTGGACATTGAATTTTGTgctttccttctgatgactcttccatgcataTCATGTTTGCGCAAGCATTGCTGCACAGTAGAACAGCGCACCATCACTCCTGTGTCAGTGAAACCTTCTTGCAGTCCTTGCTGTCGATTGGGGATTTTGCGTTTCCTTTCTCGCCAGCATTTCTGCAGTTCTGTCTGGGAGTTTTCTTGATCTTCCAGATCTTGCCTTTGACTTTCACATTTCCCCTTAACTGCCGTTTCTTAGTGATGTTTTACAGACTGGAAATTGCAACCTGGAAGCACTTTTTATAGCCTTTCTCTGCTTTGTAGGCATCAGTTAGCTTCATTTTCTGACCCTCAGTCACCTGCTTAAAGGAGCCAATGGTTGTTGAATGTGGGGACGTATAAGGATGTGACGTATAAGCCAGTGTGACTTATTGTCTGGAAAATACTGCACGCATATTACACAGCTACCAGGTTACTGCAATTAACTGcctatttattatcattttttaaggCTATTTA
>XM_034304412.1
AGCTGTGGGTGTGTCTAGACTTCAAAATGTTCCATTTAGTAATACTTTTTGGGATGGTGATGCAATGCTGGACCCTTCCTCTGCAGAATTCCTCCGCAGTGCATGGAGCAAAAACGAGGGCAAAACGAGGGTATTCAGAGGAGTTTCTGTATCCAGATGAGATGAATCCAATGGACAAGATACTTGTAGCAAACATTGggATGTCGCGTTTTCGGGGCTATGCCGTTCGAGAAGGTGACATCGCGAGTTCTGGTGTGAGGAGCGCCATTTCATGTCCAAACCAAAACTGCCTCTGGCCAAAATCGGTGGATGGATTTGTTTACGTTCCTTACACCATCTCTCCTCTCTATGaTAATATGGACCGGATCACAATCGAGATGGGAATGCTGGACATCTCATCTGCAACGTGTGTGAAATTTGTGCCACGTACGCATCAAGCTGACTTCGTCGATATCCAGCCTAGATTTGGGTGCTGGTCATTCTTGGGCAGGGTGGGAGGACCACAGCCACTCTCACTGCAGACTCCGGCGTGCATGTGGTCAGGCGTGGCATCTcatgagctcatgcatgtgcTCGGCTTCGTTCACGAGCAGTCACGCTCTGATCGCGACCGCTACGTCACCATCCTGTGGGAAAACATCATCGAGGGTCAAAGGCACAACTTTAAAAAGTACGAGACGAACAATTTAAACACCGTATATGATTATGACTCTGTGATGCACTACGGGAGATATGCTTTCTCAGAAGATGGATTACCAACTATCATCCCTAAACCAGATCCGAACATTCCTATTGGCCAGCGTGATGGACCGAGCCGACTAGATATTCACAAAATAAATCtgctgtacaactgtgGTGGCCTCGTCTGAACAGAAGCTCTGGGATAAAACTTGAAGTCACTTTATTAAAGTAGCAGCTCAGTCACTATTATTGTATATTCCAGGCTATAAgtcactttttattttgcactgtaGCAGATATTGCAACTTAGAATGCaaagctttttaaattttttttacacatccaACCAATTCATGACTTATTAtcacatttgttaaaaaaagcacaacttctgcagcaaaatatttttaataaataaatatttctactATATCAATGCATAGTTGCAAAAGCTTttccaaaagcttcagcttATGCGTCTTGAAGTAGTTCATGGTGGTGGATTTtgaggcatgtttttggatcattgtccttgTTGTGAATCTCTTTTTAGCTTGACGATATCAAATTTGCTTCcagaatttgctgatatttactggaATCTATTTTTCCATCTACCTGTGCAATGTTTTTTGTGCCACTTGCTGCCACATAACCCCAGTGAATAATAGATCCAGCCCATGCGTAACAGCTGGCGAAGTGCTCTTTTCATTAATTACTGCTCTTATTTTCAACAAACACTGTATTGCATACACTGGACATTGAATTTTGTgctttccttctgatgactcttccatgcataTCATGTTTGCGCAAGCATTGCTGCACAGTAGAACAGCGCACCATCACTCCTGTGTCAGTGAAACCTTCTTGCAGTCCTTGCTGTCGATTGGGGATTTTGCGTTTCCTTTCTCGCCAGCATTTCTGCAGTTCTGTCTGGGAGTTTTCTTGATCTTCCAGATCTTGCCTTTGACTTTCACATTTCCCCTTAACTGCCGTTTCTTAGTGATGTTTTACAGACTGGAAATTGCAACCTGGAAGCACTTTTTATAGCCTTTCTCTGCTTTGTAGGCATCAGTTAGCTTCATTTTCTGACCCTCAGTCACCTGCTTAAAGGAGCCAATGGTTGTTGAATGTGGGGACGTATAAGGATGTGACGTATAAGCCAGTGTGACTTATTGTCTGGAAAATACTGCACGCATATTACACAGCTACCAGGTTACTGCAATTAACTGcctatttattatcattttttaaggCTATTTA

Function

NR:

description
PREDICTED: high choriolytic enzyme 1-like isoform X1

GO: NA

KEGG:

id description
K08076 E3.4.24.21; astacin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911013.2 False 1938 mRNA 0.43 9 1554942 1566787
XM_034304412.1 True 1947 mRNA 0.43 9 1554942 1565392

Neighbor

gene id symbol gene type direction distance location
si:dkey-230p4.1 LOC108271988 coding downstream 2507 1529825 ~ 1552435 (-)
trnaw-cca_4 NA coding downstream 140203 1414668 ~ 1414739 (-)
esd esd,LOC107675365,LOC107601075,LOC107709410 coding downstream 150151 1396684 ~ 1404791 (-)
rubcnl rubcnl coding downstream 215720 1320263 ~ 1339222 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC106511784 coding downstream 239609 1306954 ~ 1315333 (-)
trnal-caa_7 NA coding upstream 1958 1568745 ~ 1568857 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027 coding upstream 49113 1615900 ~ 1624049 (-)
mlphb LOC108261129 coding upstream 156470 1723257 ~ 1747031 (-)
cops8 cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920 coding upstream 291475 1858262 ~ 1871493 (-)
trim63b trim63b,LOC100194566,LOC100505419 coding upstream 295366 1862153 ~ 1863790 (-)
G75740 NA non-coding downstream 87043 1467662 ~ 1467899 (-)
G75739 NA non-coding downstream 99655 1454999 ~ 1455287 (-)
G75737 NA non-coding downstream 121715 1433022 ~ 1433227 (-)
G75736 NA non-coding downstream 140765 1413842 ~ 1414177 (-)
G75734 NA non-coding downstream 158420 1396297 ~ 1396522 (-)
G75814 NA non-coding upstream 89586 1656373 ~ 1656848 (-)
G75875 NA non-coding upstream 155794 1722581 ~ 1722799 (-)
G75889 col6a3,LOC108262369 non-coding upstream 234485 1801272 ~ 1819183 (-)
G75880 NA non-coding upstream 282450 1849237 ~ 1873669 (-)
G75925 NA non-coding upstream 344409 1911196 ~ 1917438 (-)
G75770 NA other downstream 25429 1529070 ~ 1529513 (-)
trnak-uuu_2 NA other downstream 83381 1471489 ~ 1471561 (-)
trnat-agu_4 NA other downstream 106678 1448191 ~ 1448264 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 367443 1170709 ~ 1187499 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 395604 1145297 ~ 1159338 (-)
htr2aa NA other upstream 25168 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 71598 1638385 ~ 1638458 (-)
trnar-ucu_5 NA other upstream 71976 1638763 ~ 1638852 (-)
trnat-agu_7 NA other upstream 83266 1650053 ~ 1650126 (-)
trnar-ucu_6 NA other upstream 95733 1662520 ~ 1662609 (-)

Expression


Co-expression Network