lcp1 (lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195)


Basic Information

Item Value
gene id lcp1
gene name lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1170709 ~ 1187499 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911023.2
GAAAGTGTCACCTTTCCCTAGCAGATTACCTTATAAAGCCATCATGAGCAACGTTCCTGTTTTCGCATGATTGTCACTTCCTTCCTCTCATTTGAATAGATCTGTCGTTCCTCACTGCTCTGCACACTGCTTGTGTAAAGCagagtaacagagagagagaaagagaaagagacggaCCTCACGCTTACCTTTCTCAGaaaagatgGCCAGTACAGGACCAATTTCAGCTGATGAGATAGAGGAGCTGCGGGAAGCCTTCAGCAAAGTCGATCTGGACTCTAATGGCTACATCAGCACAGATGAGCTGAACGAGCTGTTTAAAGTGGCTAACCTTCCTCTGCCGGGATACCGAGTTCGCGAAATCGTCCAGGAGCTCAGTCAAACCATGGACCAAGACAAGGACGGCAAGATCACGTTCGACGAGTTTGTAAAGGTCGTTCACGGACTGAAGAGCTCCGAGGTGGCCAAAACTTTCCGCAAGGCCATCAACAAGAAGGAGGGGATCTGTGCTGTAGCGGGAACCTCAGAGCAGACTGGCACACAGCACTCGTACTCAGaggagGAGAAGGTGGCATTTGTAAACTGGGTCAACAAGGCCTTAGAGAAAGACCCCGACTGCAAACACGTCCTCCCCATGGACCCAAGCTCAAATGATCTGTTCACAGCTGTGGGAGATGGCATTGTActctgtaaaatgatcAACTTGTCTGTCCCCGATACCATCGATGAGAGAACCATCAATAAGAAGAAGCTCACACCTTTCACCATCCAGgagaatCTAAATCTGGCTCTGAACTCATCTTCGGCTATTGGCTGCCATGTTGTGAATATCGGAGCAGAGGACCTGAAGGAAGGCAGGCAACATCTGGTTCTTGGTCTTCTGTGGCAGATCATCAAAATCGGCCTGTTAGCTGATATCGAGATCAGCAGGAACGAAGccttgATTGCTTTGCTGAGGGATGGCGAGAATCTAGAGGATCTGATGAAGCTTTCCCCTGAAGAACTGCTCCTGCGATGGGCCAACTACCATCTGGAGCAGGCCGGCTGCCCAAAAATTAACAATTTCAGCTCTGATATtaagGATTCCAAGGCTTACTACAACATCCTGAACCAGGTGGCTCCGAAAGGAGATGAAGAAGGCATCCCTCCCATCCCTATCAACATGTCTGGACTGAGGGAAAAGGATGACCTGAAAAGAGCAGAGCTCATGCTGGAGCAGGCCGATCGCCTCGGCTGCCGTCAGTTTGTCTCAGCGACTGATGTTGTGCGAGGAAATCCTAAACTTAACCTGGCCTACGTGGCCAACCTTTTCAACAAATATCCTGCTCTGAAGAAGCCAGAGAACCAGGACATTGACTGGAGCTCCATCGAGGgTGAGACCAGGGAGGAACGCACTTTCCGTAACTGGATGAACTCCCTTGGAGTCAATCCTCGTGTCAACCATCTCTATGTggacCTGGCTGATGCTCTGGTCATCTTCCAGCTCTATGAGAAGATCAAAGTTCCTGTAGATTGGGACAGAGTAAACAAACCTCCATATCCCAAACTCGGCAGCAACATGAAGAAGCTGGAGAACTGTAACTACGCAGTGGAACTGGGGAAGAAAGAGGCGAAGTTTTCCCTGGTGGGAATCGCCGGGCAGGACCTGAACGAGGGCAACCGCACACTCACTCTCGCTCTGCTCTGGCAACTCATGAGGAGGTACACTCTGAACATCCTGGAAGAGCTTGGAGATGGGCAGAAGGTCAACGATGACACCATTGTCCAGTGGGTGAACAACATGCTCAGGGAAGCCGGAAAGAACACCATCTCAGGTTTCAAGGATGGATCCATAAGCAGTAGCTTGCCAGTGCTGGACCTCATCGACGCCATCCAGCCAGGCTCGATTCGCTACGATTTGGTCAAGACTGAAGATCTTACTGATGAAGAGAAACTCAACAACGCAAAGTATGCCATCTCCATGGCCAGGAAGATCGGAGCTCGAGTTTATGCACTTCCTGAAGATTTAGTGGAAGTCAAGCCCAAAATGGTGATGACGGTTTTCGCCTGCCTCATGGCCCGAGGAATGAAGAGAGTTTAGATCGAGGAGCTAACCGAGGGAAAGAAATTTACATTTGTTGTGTCTGCTTACTATTTTATGAAACTTTTGTGTGGAGATCGCAGGACTGACTGTACCATTCGGTATTCTTTTTCTCGCTAATATTACCTTTGTCCAATGCTAACTTTCTTACATAGCGTAACAGAGATGTATTAGTGACCTTGAGAagcataaaaacatttcatgcaCTCCCCATACCAATCACGTAGAGGTGATGTGTTTAATGCAcaggctgatatttttcaggaaatcagtaaaaataaaactgatagttttctattaaaa
>XR_003402581.2
GAAAGTGTCACCTTTCCCTAGCAGATTACCTTATAAAGCCATCATGAGCAACGTTCCTGTTTTCGCATGATTGTCACTTCCTTCCTCTCATTTGAATAGATCTGTCGTTCCTCACTGCTCTGCACACTGCTTGTGTAAAGCagagtaacagagagagagaaagagaaagagacggaCCTCACGCTTACCTTTCTCAGaaaagatgGCCAGTACAGGACCAATTTCAGCTGATGAGATAGAGGAGCTGCGGGAAGCCTTCAGCAAAGTCGATCTGGACTCTAATGGCTACATCAGCACAGATGAGCTGAACGAGCTGTTTAAAGTGGCTAACCTTCCTCTGCCGGGATACCGAGTTCGCGAAATCGTCCAGGAGCTCAGTCAAACCATGGACCAAGACAAGGACGGCAAGATCACGTTCGACGAGTTTGTAAAGGTCGTTCACGGACTGAAGAGCTCCGAGGTGGCCAAAACTTTCCGCAAGGCCATCAACAAGAAGGAGGGGATCTGTGCTGTAGCGGGAACCTCAGAGCAGACTGGCACACAGCACTCGTACTCAGaggagGAGAAGGTGGCATTTGTAAACTGGGTCAACAAGGCCTTAGAGAAAGACCCCGACTGCAAACACGTCCTCCCCATGGACCCAAGCTCAAATGATCTGTTCACAGCTGTGGGAGATGGCATTGTActctgtaaaatgatcAACTTGTCTGTCCCCGATACCATCGATGAGAGAACCATCAATAAGAAGAAGCTCACACCTTTCACCATCCAGgagaatCTAAATCTGGCTCTGAACTCATCTTCGGCTATTGGCTGCCATGTTGTGAATATCGGAGCAGAGGACCTGAAGGAAGGCAGGCAACATCTGGTTCTTGGTCTTCTGTGGCAGATCATCAAAATCGGCCTGTTAGCTGATATCGAGATCAGCAGGAACGAAGccttgATTGCTTTGCTGAGGGATGGCGAGAATCTAGAGGATCTGATGAAGCTTTCCCCTGAAGAACTGCTCCTGCGATGGGCCAACTACCATCTGGAGCAGGCCGGCTGCCCAAAAATTAACAATTTCAGCTCTGATATtaagGATTCCAAGGCTTACTACAACATCCTGAACCAGGTGGCTCCGAAAGGAGATGAAGAAGGCATCCCTCCCATCCCTATCAACATGTCTGGACTGAGGGAAAAGGATGACCTGAAAAGAGCAGAGCTCATGCTGGAGCAGGCCGATCGCCTCGGCTGCCGTCAGTTTGTCTCAGCGACTGATGTTGTGCGAGGAAATCCTAAACTTAACCTGGCCTACGTGGCCAACCTTTTCAACAAATATCCTGCTCTGAAGAAGCCAGAGAACCAGGACATTGACTGGAGCTCCATCGAGGgTGAGACCAGGGAGGAACGCACTTTCCGTAACTGGATGAACTCCCTTGGAGTCAATCCTCGTGTCAACCATCTCTATGTggacCTGGCTGATGCTCTGGTCATCTTCCAGCTCTATGAGAAGATCAAAGTTCCTGTAGATTGGGACAGAGTAAACAAACCTCCATATCCCAAACTCGGCAGCAACATGAAGAAGCTGGAGAACTGTAACTACGCAGTGGAACTGGGGAAGAAAGAGGCGAAGTTTTCCCTGGTGGGAATCGCCGGGCAGGACCTGAACGAGGGCAACCGCACACTCACTCTCGCTCTGCTCTGGCAACTCATGAGAGGTACACTCTGAACATCCTGGAAGAGCTTGGAGATGGGCAGAAGGTCAACGATGACACCATTGTCCAGTGGGTGAACAACATGCTCAGGGAAGCCGGAAAGAACACCATCTCAGGTTTCAAGGATGGATCCATAAGCAGTAGCTTGCCAGTGCTGGACCTCA

Function

symbol description
lcp1 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly and actin filament network formation. Located in cytoplasm. Is expressed in several structures, including eye; hematopoietic cell; hematopoietic system; mesoderm; and renal system. Orthologous to human LCP1 (lymphocyte cytosolic protein 1).

NR:

description
PREDICTED: plastin-2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17276 LCP1, PLS2; plastin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911023.2 True 2383 mRNA 0.48 16 1170709 1187499
XR_003402581.2 False 1861 misc_RNA 0.50 15 1171881 1187499

Neighbor

gene id symbol gene type direction distance location
LOC113524329 NA coding downstream 58158 1103040 ~ 1112551 (-)
LOC113524324 LOC108266872,LOC108260750 coding downstream 212971 944319 ~ 957738 (-)
dct dct coding downstream 336817 827281 ~ 833892 (-)
tlr7 tlr7,LOC108266215 coding downstream 441661 725511 ~ 729048 (-)
LOC113524316 LOC108272333 coding downstream 446297 720627 ~ 724412 (-)
trnas-uga_4 NA coding upstream 42810 1230309 ~ 1230390 (-)
trnal-cag_10 NA coding upstream 43088 1230587 ~ 1230669 (-)
trnaw-cca NA coding upstream 65424 1252923 ~ 1252994 (-)
trnal-caa_1 NA coding upstream 70643 1258142 ~ 1258256 (-)
ints6 ints6,LOC107567782,LOC107695579,LOC107725253,LOC107685346 coding upstream 83908 1271407 ~ 1282002 (-)
G75640 NA non-coding downstream 1016 1169459 ~ 1169693 (-)
G75628 NA non-coding downstream 30506 1135626 ~ 1140203 (-)
G75600 NA non-coding downstream 89303 1081207 ~ 1081406 (-)
G75599 NA non-coding downstream 90354 1079923 ~ 1080355 (-)
G75428 NA non-coding downstream 241352 929147 ~ 929357 (-)
G75636 NA non-coding upstream 21886 1209385 ~ 1215704 (-)
G75663 NA non-coding upstream 49722 1237221 ~ 1254096 (-)
G75687 NA non-coding upstream 118490 1305989 ~ 1306353 (-)
G75713 NA non-coding upstream 178883 1366382 ~ 1367066 (-)
G75719 NA non-coding upstream 187887 1375386 ~ 1377189 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 11371 1145297 ~ 1159338 (-)
LOC113524372 NA other downstream 232506 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 233741 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 306102 858404 ~ 864607 (-)
frmpd4 frmpd4 other downstream 404718 729592 ~ 765991 (-)
trnat-agu_4 NA other upstream 260692 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 283990 1471489 ~ 1471561 (-)
G75770 NA other upstream 341571 1529070 ~ 1529513 (-)
htr2aa NA other upstream 404456 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 450886 1638385 ~ 1638458 (-)

Expression


Co-expression Network