cops8 (cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920)


Basic Information

Item Value
gene id cops8
gene name cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1858262 ~ 1871493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919622.2
CCAAGTGGTTTGGTTCAATAGGTGGCGATGTTCGCGGAAATGATTGTGTTtgcaaaacaaagaagaaaaaaaaacatcctttaGCATTTCGCTTCATCCTTACCGGTTAGCCTAAACCTTacattgtgttttatgtgaAGTTTGTTGAAGATGCCAGTGGCAGTCATGCTTGGGGAACATTACGAGAAGCTTCTGGAGCAGTGTGAAACTCAGGAGCTGGAGGCTCCAGGTGGCATTGCAACTCCACAAGTTTATTCCCAGTTACTGGCCCTCTACCTACTGCACAATGATATGAACAATGCCAGATATCTTTGGAAGCGGATTCCACAAGCAATCAAAACGGCAAACCCAGAACTGGCAGCTATTTGGGCAGTAGGACAGTGTATCTGGCAGCGAGATTTCCCAGGCATCTACAGTGCAATTGCTGCCCATCAGTGGTCTGAACCAATTCTTCCTGTAATGGAGTCTCTCAGAGAGTCTACCCGCAGGAGGGCATATGGCCTTGTAGCCCAAGCATACACCTCAATCAGTGCAGAGGACTTTGCCTCCTTTGTGGGATATTCTGTGGAAGAAGCTGTAAAGGGTGTGATCAGTCACGGATGGCAGGCAGATCCCAATGCCCGGATGGTATTACCacagaaaccagATCCACCCCCTGTCTCTTTGGTTCCAAACGAGCAGCAGCTGGCTAGACTCACTGACTACGTGGCTTTCCTTGAGAACTGATCCCCCTACCCTTAACACCccccctccccacacacacacacacacaccccactccCACCCCTTTTCCATCTTCTCAGCTAAACTGTGTGATTTCAAAGGTCTTAAGTatgttcttcctgtttttgactgAGTGACATGCAGGACTCTCCCAGATGCTGATCTTACACTATGCATGTGTTTCTTAAAGTTGGATTTGATTTTGCAGTTGTTCAATGTACAGTATTTAGCCTGTGCTCTTTTCATTTGCCAgcataaataagaaattagtATTTAGCATAAAGACTCAGTTTAAGTATTCCTTAAAATTTACATGGAAAATTCATGCACGTCAAAAATGAATCACTAGACAGTTCATGATGGTCTCCATGTATTATAATGACTAATTTTTCCTTAAATCCCATGCTATGTTGTCCACAGGGAGCATAAAAGACTGTTGTGCATATTTTTACTTAATGCTAAAAGTGCATTATAAAGGCGTAATGAGAGTGCACAAGTGAGAAGACAAACCATGCGTGTGTCATATGTCATACATATGAGGTGTACATGCAACCATGGAATATTAACCCCAAAGCTTACGACTGACTAGGAATAAATAGAATACAACTATGTTCAGTGCTGCATGTATTGAAAtaaagtttaatgtttaatgcaaTTGGCCAGCATTCACAGAACACTTGAAGACCTTATCTAAACTTTTTCCTTCAAACTTCTTGAGGAAGTTTCTCTcttttacatgttacatgtcTGTGATTGCCATGTTTTAAGCACATAAAATGAACCAAGAAGTCTGTGTGCATGTAGTAAAATTTGTCATTCTACAGTCAGTATACATCAGGCTGTTGGTTTTTATCATGTGTATTTCTTCTCCGAAGGGGGCTGGGGGTGGCTTGGACATAACAAAAACATCTGCCGTTGGCAGGAAAAGATGGCTTTTACCAAGCAAAATCTAGATCTGTTTTCATGTGATAGCAAAGGCATTTACTTTGCTGGAGTTTTATGTGCAGGTTCAAAAGaagcaaataataaaagaaaaaataaatgaa

Function

symbol description
cops8 Predicted to act upstream of or within COP9 signalosome assembly and protein deneddylation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS8 (COP9 signalosome subunit 8).

NR:

description
PREDICTED: COP9 signalosome complex subunit 8

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12181 COPS8, CSN8; COP9 signalosome complex subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919622.2 True 1769 mRNA 0.42 7 1858262 1871493

Neighbor

gene id symbol gene type direction distance location
mlphb LOC108261129 coding downstream 111231 1723257 ~ 1747031 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027 coding downstream 234213 1615900 ~ 1624049 (-)
trnal-caa_7 NA coding downstream 289405 1568745 ~ 1568857 (-)
LOC113524666 LOC108271633 coding downstream 291475 1554942 ~ 1566787 (-)
si:dkey-230p4.1 LOC108271988 coding downstream 305827 1529825 ~ 1552435 (-)
ranbp2 LOC108261082,LOC108440489 coding upstream 78639 1950132 ~ 1986039 (-)
lims2 LOC108261084,LOC108440488,LOC105898085 coding upstream 117047 1988540 ~ 1998073 (-)
LOC113546994 LOC108261078 coding upstream 198054 2069547 ~ 2080413 (-)
LOC113540088 LOC108191725,LOC101885398,LOC107661227 coding upstream 363317 2234810 ~ 2246620 (-)
LOC113540058 LOC108266598,LOC108413855,LOC101471943,LOC107700103,LOC100693874 coding upstream 610101 2481594 ~ 2522385 (-)
G75889 col6a3,LOC108262369 non-coding downstream 39079 1801272 ~ 1819183 (-)
G75875 NA non-coding downstream 135463 1722581 ~ 1722799 (-)
G75814 NA non-coding downstream 201414 1656373 ~ 1656848 (-)
G75740 NA non-coding downstream 390363 1467662 ~ 1467899 (-)
G75739 NA non-coding downstream 402975 1454999 ~ 1455287 (-)
G75925 NA non-coding upstream 39703 1911196 ~ 1917438 (-)
G75926 NA non-coding upstream 41638 1913131 ~ 1925253 (-)
G75927 NA non-coding upstream 42524 1914017 ~ 1914729 (-)
G75947 NA non-coding upstream 74480 1945973 ~ 1946176 (-)
G76013 NA non-coding upstream 242697 2114190 ~ 2114599 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 54617 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 183689 1674484 ~ 1674573 (-)
trnat-agu_8 NA other downstream 184077 1674112 ~ 1674185 (-)
trnar-ucu_6 NA other downstream 195653 1662520 ~ 1662609 (-)
trnat-agu_7 NA other downstream 208136 1650053 ~ 1650126 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other upstream 176286 2047779 ~ 2064298 (-)
ifngr2 NA other upstream 813015 2684508 ~ 2753806 (-)
LOC113541352 c6h21orf62 other upstream 929513 2801006 ~ 2805863 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 1915463 3786956 ~ 3816059 (-)
G77283 NA other upstream 2968467 4839960 ~ 4844879 (-)

Expression


Co-expression Network