mmadhcb (mmadhc)


Basic Information

Item Value
gene id mmadhcb
gene name mmadhc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 4648220 ~ 4655253 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927827.2
CTGGCAGGCCGCCGTAGTGACGCCATCAAAAGGTGACCCTAGAACCTTGAGGCGCTTTCAGTTATCtttataaactgtttaaactACACAGGAATAATTCAGGTGGTATATAAACAGAAGAAGCCCAACAGGATGGCCAGCGCGCTCTGTTGCAGAGCCAGGGTGGTTACATACCTGCCAGGGCTTCACGTTCTTGTGCGACGCATAGCAGGAACCAGATGTTTCTCAGATGAGCGTCACATTAACGTCACACCACCAGATATGGGACCGAGGACGGTGTGGCCGGACGAGAAGATGGGTCCATTCGGTCCTCAGGATAAACGCTTCCAGCTGCCCGGTAACGTGGGATTTGCCAGGCAGCTAGAATGCACGGCAGAGCAGAAGTCCGGTCCTGTGCATACAATACTACCGGACGTGCTGACAGCTCCATCTAACACAGAGAGGCACGAGTTCATCCTGGCACAGTTCATCACCGAGTTCCACGAGAACACGGAGGCTTCATCGGCACACAAGGTCGACAGCGCGGAGGAGTATTTCAACCATTCCAGAGTGGAGTGTGCCATCCAGTCCTGCCCAGAACTGCTGAAAAAAGACTTTGCGATGATGTTTCCTGAAGCCCCCTCCAGCAATATGATGGTGCTCACTGTaacacagagaacagagaaTGACATGACCGCCTGGTCTGAGGAGGTGGACCAGGAGAGAGAGCAACTGCTGGCTAaatTCATTGAAGGAGCAAAGGAGATCTGCCAGGCGCTGCACACCGAGGGCTTTTGGGCCGACTTTATCGACCCTTCCTCTGGACTAGCGTTCTTCGGCCCCTACACCAACAACACGCTGTTCGAAACAGACGAGCGATACCGCCACCTGGGTTTCCAGATCGAAGACCTCGGATGCTGTAAAGTGATCCGTCACTCGCTGTGGGGCACGCACGTGTTCGTAGGAAGCGTCTTCACCGACGCGCCACCGAGCAGCCTCGTCATGAAGAAGCTGCAAGGAAATTAACTCATCAAGCACTTCATATCACAATATCCAAGAGCCCTGTATTGAAAATCAAGGGTTAATCCGGTTTCCGCGCTTGTGTGCTCGCTGTGCACGCAACCAGATCTGATCAATGGCACACAATTTCTCTCTCACCGTCAGATTTGCTGTAATCCCTATGGGGtgcttgatttatttatttttgtagatgaTTATGACAAAGTGTAGAAAAGGTCAAATCCATGCTGCTTGATTtctgtttgagaaaaaaaaaaaaaaaaaagaaaaatgccttttcttttactttgacagaaagagtgaaaacTGACGTTTGGCAGattatacatgtatattttttttgtagtatttaGTTGCCGTAGGAACTAGTTGACCAGCTTTGAGTTTTAGTATGAATTAAATGATAATAGCGAGGGTCTCATTTTTGCTTTTCATGACTCTAAATGAATTTGAGATGTTCTGAATTTcagctaaaatatttaaagtgcAAGACTCGCATGTCTGGAAATATGGTTTAGATGGGTGTAACAGTACAGTGATAACAAACTGGGAATATTTTTTGGGAACAATGTATAGATTTATCATCACAAGGATAAAAGATTGTATGCCACAGTGTAAGTCTATCACTAAAGATCATTTCTATCAGACACAACTCCGAGATCCTGCTCTTTCTACAACCATGATCCtcttagataaaaaaaaaatattccagcaATTTCCTTCTCATTATGTAATCAAAGAATTTAACCCTTGGATATGTCTCTGTAAATGTCATTTAATGTTatccttaatttaaaaaaaaaggaataaacgGGTGCTATTTA

Function

symbol description
mmadhc Involved in cobalamin metabolic process. Located in mitochondrion. Implicated in methylmalonic aciduria and homocystinuria type cblD.

NR:

description
PREDICTED: methylmalonic aciduria and homocystinuria type D protein, mitochondrial isoform X2

GO:

id name namespace
GO:0009235 cobalamin metabolic process biological_process
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927827.2 True 1823 mRNA 0.45 8 4648220 4655253

Neighbor

gene id symbol gene type direction distance location
map3k19 map3k19 coding downstream 132781 4505291 ~ 4515439 (-)
tmem163a tmem163a,LOC108266155,LOC107725256,LOC108425930,LOC107658221,LOC107684456,LOC107555363 coding downstream 178579 4414043 ~ 4469641 (-)
LOC113535176 NA coding downstream 314378 4332895 ~ 4333842 (-)
sfrp2 NA coding downstream 354084 4290072 ~ 4294136 (-)
cntnap5a LOC108266700,LOC108425961 coding downstream 521727 4003726 ~ 4126493 (-)
LOC113535278 rnd3,LOC108266936,LOC103021440,LOC108425951,LOC103141407,LOC106582403,LOC107600972 coding upstream 113308 4768561 ~ 4777472 (-)
nmi nmi coding upstream 166979 4822232 ~ 4829512 (-)
ubxn4 ubxn4 coding upstream 195386 4850639 ~ 4860350 (-)
epc2 epc2 coding upstream 436056 5091309 ~ 5103522 (-)
acvr2aa LOC108266626,LOC108412453,LOC107709421,LOC107673126 coding upstream 460135 5115388 ~ 5158822 (-)
G77130 NA non-coding downstream 9669 4638347 ~ 4638551 (-)
G77107 NA non-coding downstream 42541 4605305 ~ 4605679 (-)
G77040 NA non-coding downstream 154501 4491923 ~ 4493719 (-)
G76899 NA non-coding downstream 286791 4358744 ~ 4361429 (-)
G76860 NA non-coding downstream 362397 4285623 ~ 4285823 (-)
G77291 NA non-coding upstream 197803 4853056 ~ 4879593 (-)
G77364 NA non-coding upstream 347456 5002709 ~ 5055475 (-)
G77366 NA non-coding upstream 354330 5009583 ~ 5010313 (-)
G77372 NA non-coding upstream 370384 5025637 ~ 5042889 (-)
G77381 NA non-coding upstream 395332 5050585 ~ 5059601 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 832161 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 1842357 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 1894414 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 2583922 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 2844575 1797982 ~ 1803645 (-)
G77283 NA other upstream 184707 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 676331 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 1583702 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 1667790 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 1873793 6529046 ~ 6615660 (-)

Expression


Co-expression Network