LOC113534866 (LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894)


Basic Information

Item Value
gene id LOC113534866
gene name LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6503829 ~ 6506790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927830.2
atggcttCTAAGTTTTCAGAAGAGGATTTCTCCTGTCCTGTGTGCTGTGAAATCTTCAAGGATCCTGTTGTTCTGCGCTGcagtcacagtgtgtgtaaagtgtgtttgcAGCAGTTCTGGGAGACCAAAGGATCCAGAGAATGTCCTGTTTGTAGGAGGAAGTCGTCTCTAGAAAACCCTCCCACAAACCTGGCCTTAAAGAACCTGTGTGAGACTTTCTTACAGGAGAGAAGTCAGAGATCTTCATCAGTGTCTGAAACAGTCTGCAGTCTGCACAGTGAGAAACTCAAACTCTTCTGTGTGGACGATCAACAgccagtgtgttttgtgtgtcagACTTCAAGAAAACACACCAACCACAAATTCTGCCCCATTGACGAGGCAGCAACAGACTGtaagGAGGAGCTCAAAACTTCACTGAAGCCCCTACAGGAGAAACTGGAGATCTTTAAAGACTGTAAACTGAACTGGAGTCAGACTGCAGAACATATAAAGATTCAGGCCCAACACACAGAGCGGCAGATTAAGGAGGAGTTTGAGAAGCTTCACCAGTTTCTACGAGATGAAGAGGCAGCCAGGATCGCTGcactgagagaggaagaggagcagaagaGTCAGATGATGAAGGAGAAGATTGAGAAGCTGAGCAGAGACATATCATCTCTTTCAGACACAATCAGAGCCATAGAAGAGGAGATGAGAGCTGAAGACGTCTCGTTCTTACAAaactACAAGGCCACAGTGAAAAGAGCTCAGTGCACACTGCAGCATCCAGAGGAGCTTTCAGGAGCACTGATCCATGTGGCAAAACATCTGTCCAACCTGAAGTTCAGAGTCTGGGAGACGATGCAGCATGCTGTCCAATATAcacCTGTATCTCTGGACCCCAACACTGTTCATCCTGAACTCATTGTATCTGATGATCTGACCAGTGTGAGACTCAGTGATGAGGAACAGAAACTTCCTGATAATCCAGAGAGATTTGATGAATATTGCTGTATCCTGGGCTCTGAGGGCTTTAACTCAGGGACACACTGCTGGGATGTTGAAGTTGGAGACTGTACACACTGGGCATTGGGTGTGATGACAGAATCTGCTCAGAGGAAGGGAGAGATATTCTCCAGAAGTGGAATCTGGTGTGTGGGGAATTATGATGGTGAATATGGAGCAGGTTCTACACCACAGCCAGTCACTCTCCTCTCAGTAGCACAGAAACTCCAGACGATCAGAGTGCAGCTGGACTgggacagaggaaagctgtcaTTCTCCGAccctctcactaacacacacatacacactttcacacacacatttactgacAAATTACTGCCATATCTAAGTGTTGGTTGTAAAGAATCTCCTCTAAAGATCCTCCCACTTCAGTGCTCTGTAAGAGTGAATCAGATCAGTTAGAGCtgatattgttttattccagttcattaatgaaatattgcagattaaaacatttatattcttTGTGAAAGTTTGTTTTTACAGAAGCACTGAACAGTTCATTGTGAAAagcttttaa

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927830.2 True 1531 mRNA 0.45 6 6503829 6506790

Neighbor

gene id symbol gene type direction distance location
LOC113534871 LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890 coding downstream 18254 6482345 ~ 6485575 (-)
mcf2lb LOC108266232,LOC108430488 coding downstream 72705 6408161 ~ 6431124 (-)
LOC113534858 LOC108266244 coding downstream 260117 6225854 ~ 6243712 (-)
LOC117597339 NA coding downstream 272637 6228208 ~ 6231192 (-)
arhgap15 arhgap15 coding downstream 1021854 5440481 ~ 5481975 (-)
LOC113534867 LOC108262141,LOC108266899,LOC108266212,LOC108266892,LOC108266894,LOC108266896,LOC108266891,LOC108266893,LOC108266890,LOC108266242 coding upstream 21795 6528585 ~ 6532640 (-)
LOC113534869 LOC108266892,LOC108262141,LOC108266212,LOC108266891,LOC108266894,LOC108266899,LOC108266890,LOC108266896,LOC108266893 coding upstream 57123 6563913 ~ 6567039 (-)
LOC117597446 LOC108266891,LOC108266893,LOC108266892,LOC108266212,LOC108266242,LOC108262141,LOC108266890,LOC108266899,LOC108266894 coding upstream 86384 6593174 ~ 6606144 (-)
LOC113534868 LOC108266892,LOC108266891,LOC108266893,LOC108266242,LOC108266896,LOC108266899,LOC108266894,LOC108266212,LOC108266890 coding upstream 86744 6593534 ~ 6596688 (-)
LOC117595670 LOC108266894,LOC108266899,LOC108266212,LOC108266890,LOC108266896,LOC108262141,LOC108266891,LOC108266892,LOC108266893,LOC108266242 coding upstream 106745 6613535 ~ 6618013 (-)
G77840 NA non-coding downstream 175744 6326099 ~ 6328085 (-)
G77799 NA non-coding downstream 213818 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 222405 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 248679 6253870 ~ 6255150 (-)
G77763 NA non-coding downstream 301056 6202569 ~ 6202773 (-)
LOC117597449 NA non-coding upstream 26660 6533450 ~ 6536271 (-)
G78172 NA non-coding upstream 570631 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 678643 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 770029 7276819 ~ 7292595 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding upstream 807907 7314697 ~ 7340303 (-)
LOC117597343 NA other downstream 179149 6323043 ~ 6324680 (-)
LOC117597406 LOC108266244 other downstream 250483 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 1164196 5331584 ~ 5339633 (-)
G77283 NA other downstream 1658950 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 2687770 3786956 ~ 3816059 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 22256 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other upstream 35643 6542433 ~ 6545953 (-)
G78159 NA other upstream 536997 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 942258 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 1037716 7544506 ~ 7549631 (-)

Expression


Co-expression Network