LOC113534868 (LOC108266892,LOC108266891,LOC108266893,LOC108266242,LOC108266896,LOC108266899,LOC108266894,LOC108266212,LOC108266890)


Basic Information

Item Value
gene id LOC113534868
gene name LOC108266892,LOC108266891,LOC108266893,LOC108266242,LOC108266896,LOC108266899,LOC108266894,LOC108266212,LOC108266890
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6593534 ~ 6596688 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927836.2
ACAGCCTGCAGTGTTCTGCTCTGGGGAGTTTAGTTTTATTCTCGGTTTAGGGAGAAATCTGAGTCTCATTTTCAGCACCGTGAAAGGAAGCGATTACTAACCGGAGCTACAAAGTTATTTGTTTAACCTGAAAGAAACCTGAAATCAGGGTGTGATTACTTTTTATcagagtgaaagtgaaactcTGAACTCTCGGActagagagaaaaacaacagcagttaaATGGCTTGTAAGTTTTCAGAGGAGGATTTGTCCTGTCCTGTGTGCTGTGAAATCTTCAAGGATCCTGTTGTTCTGCTCTGcagtcacagtgtgtgtaaagtgtgtttgcAGCAGTTCTGGGAGACCAAAGGATCCAGAGAATGTCCTGTTTGTAGGAGGAAGTCGTCTCTAGAAACCCCTCCCATAAACCTGGCCTTAAAGAACCTGTGTGAGACTTTCTTACAGGAGAGAAGTCAGAGCTCTTCATCAGCGTCTGAAACAGTCTGCAGTCTGCACAGTGAGAAACTCAAACTCTTCTGTCTGGAGGATCAACAGCcggtgtgttttgtgtgtcagACTTCAAGAAAACACACCAATCACAAATTCTGCCCCATTGACGAGGCAGCAACAGACTGtaagGAGGAGCTGAAAACTTCACTGAAGCCCCTACAGGAGAAACTGAAGATCTTTAAAGACTGTAAACTGAACTGGTGTCAGACTGCAGAACATATAAAGATTCAGGCCCAACACACAGAGCGGCAGATTAAAGAGGTTTTTGAGAAGCTTCACCAGTTTCTACGAGATGAAGAGGCAGCCAGGATCTCTGcactgagagaggaagaggagcagaagaGTCAGATGATGGAGGAGAAGATTGAGAAGCTGAGCAGAGACATATCATCTCTTTCAGACACGATCAGTACCACAGAAGAGGAGATGAGAGCTGAAGATGTCTCGTTCTTAGAAAACTACAAGGCCACAGTGAAAAGAGCTCAGTGCACACTGCAGCATCCAGAGGAGCTTTCAGGAGCACTGATCCATGTGGCAAAACATCTGTCCAACCTGAAGTTCAGAGTCTGGGAGAAGATGCAGGACGCTGTCCAATACAcacCTGTAACTCTGGACCCCAACACTGTTCATCCTAAACTCATTGTATCTGATGATCTGACCAGTGTGAGATTCAgtgatgagaaacagaaaataccTGATAATCCAGAGAAATTTGATGATTGTTTGTGCATCCTGGGCTCTGAGGGCTTTAACTCAGGGACACACTGCTGGGATGTTGAAGTTGGAGACTGTACAGTCTGGTTTGTGGGTGTGATGACAGAATCTGCTCAGAAGAAGGGAGACGTATTCTCCAGAAGTGGAATCTGGTGTGTGAGGTATTATAAGGATAAATATAGAGCAGATTCTACACCACAGCCAGAGACTCTCCTCTCAGTAGCACAGAAACTCCAGAGGATCAGAGTGCAGCTGGACTgggacagaggaaagctgtcaTTCTCCGAccctctcactaacacacacatacacactttcacacacacatttactgacAAATTACTGCCATTCCTATGTGTTTATGGTAAAGAATCTCCTCTAAAGATCCTCCCACTTCAGTGCTCTGTAAGAGTGAATCAGATCAGTTAGAGCTGATATTATTTATTCCAGTTCATTAATGAA

Function

NR:

description
PREDICTED: tripartite motif-containing protein 35-like

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927836.2 True 1669 mRNA 0.45 6 6593534 6596688

Neighbor

gene id symbol gene type direction distance location
LOC113534869 LOC108266892,LOC108262141,LOC108266212,LOC108266891,LOC108266894,LOC108266899,LOC108266890,LOC108266896,LOC108266893 coding downstream 26495 6563913 ~ 6567039 (-)
LOC113534867 LOC108262141,LOC108266899,LOC108266212,LOC108266892,LOC108266894,LOC108266896,LOC108266891,LOC108266893,LOC108266890,LOC108266242 coding downstream 60894 6528585 ~ 6532640 (-)
LOC113534866 LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894 coding downstream 86744 6503829 ~ 6506790 (-)
LOC113534871 LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890 coding downstream 107959 6482345 ~ 6485575 (-)
mcf2lb LOC108266232,LOC108430488 coding downstream 162410 6408161 ~ 6431124 (-)
LOC117595670 LOC108266894,LOC108266899,LOC108266212,LOC108266890,LOC108266896,LOC108262141,LOC108266891,LOC108266892,LOC108266893,LOC108266242 coding upstream 16847 6613535 ~ 6618013 (-)
LOC117597448 epb41l5,LOC107566159 coding upstream 32283 6628971 ~ 6677161 (-)
LOC117597447 rnf17 coding upstream 111563 6708251 ~ 6715332 (-)
uggt2 uggt2,LOC108266228,LOC108430493,LOC107600415,LOC107663813,LOC107655477 coding upstream 132253 6728941 ~ 6769727 (-)
LOC113535281 oxgr1 coding upstream 246918 6843606 ~ 6845500 (-)
LOC117597449 NA non-coding downstream 57263 6533450 ~ 6536271 (-)
G77840 NA non-coding downstream 265449 6326099 ~ 6328085 (-)
G77799 NA non-coding downstream 303523 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 312110 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 338384 6253870 ~ 6255150 (-)
G78172 NA non-coding upstream 480733 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 588745 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 680131 7276819 ~ 7292595 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding upstream 718009 7314697 ~ 7340303 (-)
G78259 NA non-coding upstream 745818 7342506 ~ 7343664 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other downstream 47581 6542433 ~ 6545953 (-)
LOC117597343 NA other downstream 268854 6323043 ~ 6324680 (-)
LOC117597406 LOC108266244 other downstream 340188 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 1253901 5331584 ~ 5339633 (-)
G77283 NA other downstream 1748655 4839960 ~ 4844879 (-)
G78159 NA other upstream 447099 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 852360 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 947818 7544506 ~ 7549631 (-)
G78626 LOC108266388 other upstream 1148038 7744726 ~ 7747638 (-)
G79221 NA other upstream 2068002 8664690 ~ 8665579 (-)

Expression


Co-expression Network