LOC113534871 (LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890)


Basic Information

Item Value
gene id LOC113534871
gene name LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6482345 ~ 6485575 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927840.2
TCTGATGTAAATGATGACTGTAACAGGTCATAAAGTGTCTCTCTAAAACTCCTCCTATTAAGGAAGTGCTGAGTCTGAGACGACTGCAGTCCTTCCTAAACAGCCTGCAGTGTTCTGCTCTGGGGAGTTTAGTTTTATTCTCAGTTTATGGAGAAATCTGAGTCTCATTTTCGGCACTGTGAAAGGAAGTGATTACTAACTGGAGCTACAAAGTCATCTGTTCAACCTGAAAGAAACCTGAAATCAGGGTGTGATTACTTTTTATCAGAGTGAAAGTGAACTCTGAACTCTTGGActagagagaaaaacaacaacagcaaaataaaatggctTCTAAGTTTTCAGAGGAGGATTTCTCCTGTCCTGTGTGCTGTGAAATCTTCAAGGATCCTGTTGTTCTGCTCTGcagtcacagtgtgtgtaaagtgtgtttgcAGCAGTTCTGGGAGACCAAAGGATCCAGAGAATGTCCTGTTTGTAGGAGAAAGTCATCTATGTCTGATCCTCCCACAAACCTGGCCTTAAAGAACCTGTGTGAGACTTTCTTACAGGAGAGAAGTCAGAGATCTTCATCAGTGTCTGAAACAGTCTGCAGTCTGCACAGTGAGAAACTCAAACTCTTCTGTCTGGACGATCAAcagccggtgtgtgtggtgtgtagggattcaagaaaacacacaaaccacaaattCTGCCCCATTGACGAGAGAGCAACAGACTGTAAGGAGGAGCTGAAAACTGCACTGAAGCCCCTACAGGAGAAGCTGAAGATCTTTAAAGACTGTAAACTGAACTGGAGCCAGACTGCAGAACATATAAAGATTCAGGCCCAGCACACAGAGCGGCAGATTAAAGAGGTGTTTGAGAAGCTTCACCAGTTTCTACAAGATGAAGAGGCAGCCAGGATCGCTGcactgagagaggaagaggagcagaagagtcatatgatgaagaagaagattgAGAAGCTGAGCAGAGACATATCATCTCTTTCAGACACAATTAGAGCCATAGAAGAGGAGACAAGTGCTGAAGACGTCTCGTTCTTACAGAACTACAAGGCCACAGTGAaaagAGCCCAGTGCACACTGCAGCATCCAGAGGAGCTTTCAGGAGCACTGATCCATGTGGCAAAACATCTGTCCAACCTGAAGTTCAGAGTCTGGGAGAAGATGCAGCATGCTGTCCAATATAcacCTGTAACTCTGGACCCCAACACTGTTTATCCTGGACTCATTGTATCTGATGATCTGACCAGTGTGAGACTCAGTGATGAGAAACAGAAACTTCCTGATAATCCAGAGAGATTTGATGAATATTTCTGCATCCTGGGCTCTGAGGGCTTTAACTCAGGGACACACTGCTGGGATGTTGAAGTTGGAGACTGTACAGTCTGGGATGTGGGTGTGATGACAGAGTCTGCTCAGAGGAAGGGAGAGATAAGCTCCAGAAGTGGAATCTGGTATGTGGGAAATTATGATGGTAAATATGTAGCAGGTTCTACACCACAGCCAGACACTTTGCTCTCAGTAGCACAGAAACTCCAGAGGATTAGAGTGCAGCTGGACTGGAACAGAGGAAAGCTGTCATTCTCCAAccctctcactaacacacacatacacactttcacacacacatttactgacAAATTATTGCCATTCCTAGGTGTTTTTGGTTCTCTAAAGATCCTCCCACTTCAGTGCTCTGTAAGAGTGAATCAGATCAGTTAGAGCTGATATTGTTTTATtctagttcattaataaaatattgcagATTAAAAGATTCATATTCTTTGTGAAAGTTTGTTTTTACAGAAGCACTGAACAGTTCATTGTGAAAAGTTTTTAAGTcattaaatgcaattaaaatgattttgatttaaaataatgaccTACTCTTTTGAAATAAAGAgttattaaatcaaattaaattgatacaccacaaacaaataaa

Function

NR:

description
PREDICTED: tripartite motif-containing protein 35-like

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927840.2 True 1953 mRNA 0.42 7 6482345 6485575

Neighbor

gene id symbol gene type direction distance location
mcf2lb LOC108266232,LOC108430488 coding downstream 51221 6408161 ~ 6431124 (-)
LOC113534858 LOC108266244 coding downstream 238633 6225854 ~ 6243712 (-)
LOC117597339 NA coding downstream 251153 6228208 ~ 6231192 (-)
arhgap15 arhgap15 coding downstream 1000370 5440481 ~ 5481975 (-)
acvr2aa LOC108266626,LOC108412453,LOC107709421,LOC107673126 coding downstream 1323523 5115388 ~ 5158822 (-)
LOC113534866 LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894 coding upstream 18254 6503829 ~ 6506790 (-)
LOC113534867 LOC108262141,LOC108266899,LOC108266212,LOC108266892,LOC108266894,LOC108266896,LOC108266891,LOC108266893,LOC108266890,LOC108266242 coding upstream 43010 6528585 ~ 6532640 (-)
LOC113534869 LOC108266892,LOC108262141,LOC108266212,LOC108266891,LOC108266894,LOC108266899,LOC108266890,LOC108266896,LOC108266893 coding upstream 78338 6563913 ~ 6567039 (-)
LOC117597446 LOC108266891,LOC108266893,LOC108266892,LOC108266212,LOC108266242,LOC108262141,LOC108266890,LOC108266899,LOC108266894 coding upstream 107599 6593174 ~ 6606144 (-)
LOC113534868 LOC108266892,LOC108266891,LOC108266893,LOC108266242,LOC108266896,LOC108266899,LOC108266894,LOC108266212,LOC108266890 coding upstream 107959 6593534 ~ 6596688 (-)
G77840 NA non-coding downstream 154260 6326099 ~ 6328085 (-)
G77799 NA non-coding downstream 192334 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 200921 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 227195 6253870 ~ 6255150 (-)
G77763 NA non-coding downstream 279572 6202569 ~ 6202773 (-)
LOC117597449 NA non-coding upstream 47875 6533450 ~ 6536271 (-)
G78172 NA non-coding upstream 591846 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 699858 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 791244 7276819 ~ 7292595 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding upstream 829122 7314697 ~ 7340303 (-)
LOC117597343 NA other downstream 157665 6323043 ~ 6324680 (-)
LOC117597406 LOC108266244 other downstream 228999 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 1142712 5331584 ~ 5339633 (-)
G77283 NA other downstream 1637466 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 2666286 3786956 ~ 3816059 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 43471 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other upstream 56858 6542433 ~ 6545953 (-)
G78159 NA other upstream 558212 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 963473 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 1058931 7544506 ~ 7549631 (-)

Expression


Co-expression Network