arhgap15 (arhgap15)


Basic Information

Item Value
gene id arhgap15
gene name arhgap15
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 5440481 ~ 5481975 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928148.2
CTAAAtgacactcactctctcacacacacattcttttcttttactgtCCCACCATCTCTAACTGTGGGATTATCTAAAGACAGCACCGCGGCCATATCATCAGATGAGCAGCACTAGCGCCATGCAGAATGTGTCGAAGCCACCTCCTCCTCTGGTGCTGCCTCAAGGAGCCGTAGCCATGAGGATGAAAAGCTCTACAGGCAGCGGTGAGCGCCTGAGTCAAACCAAATCCATGGTCATACCGGACCTCGACACACCACAGAAACCACTTAACCGACATCGCAGGAATCAGTCCCAGCACAACACCAGTCAAGGTGTaccacagCTCCAGCCAAGTTTGCATGGGGTTTATCTCAACAAAACCAAGATCTCTGAAGGAGGAAAGAAACTCAAGAAAAACTGGACATTAGCCTGGGTTGTCCTTTCGTCAAATGAGCTGCATTTTTACAAGGACAGCAAGCAAGAAGCAATGGCCAGTTTGAAACCAGGAATTAAACCAGAAGGAGTGGACCTCTGCGGTGCTGTCGTAGAATGGACAACAGAGAAGTCGAGTCGGAAGAATGTGTTTCAGATAACAACAAGGTCTGGTGAGGAGCTGCTTCTGCAATCAGACGACTACCCCACAATCAGTAAATGGCACGATGCCATCAAAAAAACAGCCGACCGATCGTCCAGTGCAGAAGCAGAGTCCGGCGGGGGAAAGGCCACGTTACATAGGTCCAGCAGCACAGAGTGTCTGCCCAGACGAGCCCATGACTCAACAAAATCCAAAGCCAAAGAGCCAAAATCAGAGAACAGACGCTCTCTCATGTTCAAGCTGAACTACAGTGCCTCTGACAGTGCAGATAAGAACGGCGTGAAGAATCGCCTCAAGAAGTTCATCTCCAGACGGCCCTCCATGAAAACACTACAGGAGAAAGGCCTCATTAAAGATTGCGTCTTTGGATGTCACATGTTGACTTTGTGTCAGCGTGAAGGGACCACGGTTCCCAAATTTGTCCAGCTGTGTGTCAAGGAAGTGGAAAAACGAGGGCTTGAGGCTGATGGCATATACAGAGTGAGTGGCAACCTGGCCACTATTCAGAAACTACGCTTCCTAGTTGACCAAGAGGAGGAGCTGGATTTGGGCGACAGCCAATGGGAGGACATTCATGTCATCACTGGTGCGCTAAAGATGTTTTTCCGCGAACTGCCAGAGCCTCTGTTTCCCTTTCGCTTTTTCGAAATGTTCGTGGAGGCCATAAAAACTAAGGAGCAGAAGCAGAAGGTGCAGGCGCTGAAGAAGCTGGTCCATCAACTCCCCAAACCCAACCATAACACCATGAAACTGCTATTCCATCACCTGCAGAGAGTTTTGACAAAGTCACGGCAAAACCTCATGTCGAGCCAAGGCATCAGCATTGTTTTTGGACCGACTCTCATGTGGCCTGAGCTGGATGTGGGGAACATGGCTGTCAACATGCTGTACCAGAACCAGATAGTGGAATTCATGCTCATTGAATGTGTGGAGATCTTTGGACCAGAAACCAAGTAACAAGTGCTTAAATATAAAAGGAGTTATTTTATGACAGGACtacatgcacatttatttttcatgaaaagGAGACAATAAAGTaaagataacaggaacttgcaGGACTTTGCTCTCTGAGCAAACGTGGTTCCTCTTGTTGCACTTCATATTCCGGCGTTAGTGAAGTTGTACGCCGGGTTTactttgtgtgatttttgcctTGAGTTTATCATCGATACGAAAATCATACAATGTAAAAGAACTCTGTGGTTGTGAATTGAGAACAGTGTTCTTGAAAACATGCACCAATGTCACCTCCAGACAATTTAGTACCACTGTGACCAAACAGAGCCAAAATTCCGACAGTgtgaaatttttgttttattaaaatctctAAGCTTCAGCAATATAAAACGAATATTAGGATGGTGCTGTAGCTTTATGTAAAATTCACAGGACAGCAAATGTACAGCCTACATGCCTGGACCCTCGTACAGTGACTTGTATAGCTATCATACGTGCTAAcagacaggggaaaaaaaattatttattattatttttttatttttttttacctcaagctcactctGAAGAACAACATTCCATGTTGTTCTTATTTATCCAGACAAACAATTCCAAACTCCttttcttcatgttttaaataatttctctaaCATTGCTACTATTATACAAAGGGCTTATTTCTGTTcatgcttattttttatttctgaacaagCCCAGATCATGCTGACTTTCCTACAAGTGTGTTACGCTTCCCCGCgatgcagcaggagcagcagtttaAATGATGCACAGGTTGGCTACATGAAGGAAGCAACCTGCATGgtcctatcacatgacagcggAGAGTTAGgtagtgggtgggaatttgcAAGACCAAATTGGAGAGAaaattgtgtgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggggtggGGGGCGTTTGTGTGCTTTGGGCACTTAAGGTTAATTCTGAGCTATGTCATGTTTTCCTGATCAGTTTTGACTTTTCAATGTGTaggtcagaaaatgtttttttttgacactgTGTCATAAAGACTTGTGTACTCTTGTAAATAAAAAGTTATCTTTTT
>XM_026928149.2
CTAAAtgacactcactctctcacacacacattcttttcttttactgtCCCACCATCTCTAACTGTGGGATTATCTAAAGACAGCACCGCGGCCATATCATCAGATGAGCAGCACTAGCGCCATGCAGAATGTGTCGAAGCCACCTCCTCCTCTGGTGCTGCCTCAAGGAGCCGTAGCCATGAGGATGAAAAGCTCTACAGGCAGCGGTGAGCGCCTGAGTCAAACCAAATCCATGGTCATACCGGACCTCGACACACCACAGAAACCACTCCAGCCAAGTTTGCATGGGGTTTATCTCAACAAAACCAAGATCTCTGAAGGAGGAAAGAAACTCAAGAAAAACTGGACATTAGCCTGGGTTGTCCTTTCGTCAAATGAGCTGCATTTTTACAAGGACAGCAAGCAAGAAGCAATGGCCAGTTTGAAACCAGGAATTAAACCAGAAGGAGTGGACCTCTGCGGTGCTGTCGTAGAATGGACAACAGAGAAGTCGAGTCGGAAGAATGTGTTTCAGATAACAACAAGGTCTGGTGAGGAGCTGCTTCTGCAATCAGACGACTACCCCACAATCAGTAAATGGCACGATGCCATCAAAAAAACAGCCGACCGATCGTCCAGTGCAGAAGCAGAGTCCGGCGGGGGAAAGGCCACGTTACATAGGTCCAGCAGCACAGAGTGTCTGCCCAGACGAGCCCATGACTCAACAAAATCCAAAGCCAAAGAGCCAAAATCAGAGAACAGACGCTCTCTCATGTTCAAGCTGAACTACAGTGCCTCTGACAGTGCAGATAAGAACGGCGTGAAGAATCGCCTCAAGAAGTTCATCTCCAGACGGCCCTCCATGAAAACACTACAGGAGAAAGGCCTCATTAAAGATTGCGTCTTTGGATGTCACATGTTGACTTTGTGTCAGCGTGAAGGGACCACGGTTCCCAAATTTGTCCAGCTGTGTGTCAAGGAAGTGGAAAAACGAGGGCTTGAGGCTGATGGCATATACAGAGTGAGTGGCAACCTGGCCACTATTCAGAAACTACGCTTCCTAGTTGACCAAGAGGAGGAGCTGGATTTGGGCGACAGCCAATGGGAGGACATTCATGTCATCACTGGTGCGCTAAAGATGTTTTTCCGCGAACTGCCAGAGCCTCTGTTTCCCTTTCGCTTTTTCGAAATGTTCGTGGAGGCCATAAAAACTAAGGAGCAGAAGCAGAAGGTGCAGGCGCTGAAGAAGCTGGTCCATCAACTCCCCAAACCCAACCATAACACCATGAAACTGCTATTCCATCACCTGCAGAGAGTTTTGACAAAGTCACGGCAAAACCTCATGTCGAGCCAAGGCATCAGCATTGTTTTTGGACCGACTCTCATGTGGCCTGAGCTGGATGTGGGGAACATGGCTGTCAACATGCTGTACCAGAACCAGATAGTGGAATTCATGCTCATTGAATGTGTGGAGATCTTTGGACCAGAAACCAAGTAACAAGTGCTTAAATATAAAAGGAGTTATTTTATGACAGGACtacatgcacatttatttttcatgaaaagGAGACAATAAAGTaaagataacaggaacttgcaGGACTTTGCTCTCTGAGCAAACGTGGTTCCTCTTGTTGCACTTCATATTCCGGCGTTAGTGAAGTTGTACGCCGGGTTTactttgtgtgatttttgcctTGAGTTTATCATCGATACGAAAATCATACAATGTAAAAGAACTCTGTGGTTGTGAATTGAGAACAGTGTTCTTGAAAACATGCACCAATGTCACCTCCAGACAATTTAGTACCACTGTGACCAAACAGAGCCAAAATTCCGACAGTgtgaaatttttgttttattaaaatctctAAGCTTCAGCAATATAAAACGAATATTAGGATGGTGCTGTAGCTTTATGTAAAATTCACAGGACAGCAAATGTACAGCCTACATGCCTGGACCCTCGTACAGTGACTTGTATAGCTATCATACGTGCTAAcagacaggggaaaaaaaattatttattattatttttttatttttttttacctcaagctcactctGAAGAACAACATTCCATGTTGTTCTTATTTATCCAGACAAACAATTCCAAACTCCttttcttcatgttttaaataatttctctaaCATTGCTACTATTATACAAAGGGCTTATTTCTGTTcatgcttattttttatttctgaacaagCCCAGATCATGCTGACTTTCCTACAAGTGTGTTACGCTTCCCCGCgatgcagcaggagcagcagtttaAATGATGCACAGGTTGGCTACATGAAGGAAGCAACCTGCATGgtcctatcacatgacagcggAGAGTTAGgtagtgggtgggaatttgcAAGACCAAATTGGAGAGAaaattgtgtgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggggtggGGGGCGTTTGTGTGCTTTGGGCACTTAAGGTTAATTCTGAGCTATGTCATGTTTTCCTGATCAGTTTTGACTTTTCAATGTGTaggtcagaaaatgtttttttttgacactgTGTCATAAAGACTTGTGTACTCTTGTAAATAAAAAGTTATCTTTTT

Function

symbol description
arhgap15 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human ARHGAP15 (Rho GTPase activating protein 15).

NR:

description
PREDICTED: rho GTPase-activating protein 15

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K20637 ARHGAP15; Rho GTPase-activating protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928148.2 True 2638 mRNA 0.44 14 5440481 5481975
XM_026928149.2 False 2581 mRNA 0.44 13 5440481 5481975

Neighbor

gene id symbol gene type direction distance location
acvr2aa LOC108266626,LOC108412453,LOC107709421,LOC107673126 coding downstream 281659 5115388 ~ 5158822 (-)
epc2 epc2 coding downstream 336959 5091309 ~ 5103522 (-)
ubxn4 ubxn4 coding downstream 580131 4850639 ~ 4860350 (-)
nmi nmi coding downstream 610969 4822232 ~ 4829512 (-)
LOC113535278 rnd3,LOC108266936,LOC103021440,LOC108425951,LOC103141407,LOC106582403,LOC107600972 coding downstream 663009 4768561 ~ 4777472 (-)
LOC113534858 LOC108266244 coding upstream 743879 6225854 ~ 6243712 (-)
LOC117597339 NA coding upstream 746233 6228208 ~ 6231192 (-)
mcf2lb LOC108266232,LOC108430488 coding upstream 926186 6408161 ~ 6431124 (-)
LOC113534875 rnf17 coding upstream 969389 6451364 ~ 6708475 (-)
LOC113534871 LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890 coding upstream 1000370 6482345 ~ 6485575 (-)
G77540 NA non-coding downstream 25705 5414341 ~ 5414776 (-)
G77511 LOC108266643,LOC108438030 non-coding downstream 58210 5380298 ~ 5382271 (-)
G77496 NA non-coding downstream 109094 5330898 ~ 5331387 (-)
G77397 NA non-coding downstream 233450 5136933 ~ 5207031 (-)
G77353 NA non-coding downstream 297353 5112272 ~ 5143128 (-)
G77629 NA non-coding upstream 11342 5493317 ~ 5548165 (-)
G77645 efnb2 non-coding upstream 87882 5569857 ~ 5573384 (-)
G77719 NA non-coding upstream 636956 6118931 ~ 6119138 (-)
G77763 NA non-coding upstream 720594 6202569 ~ 6202773 (-)
LOC117597312 NA non-coding upstream 771895 6253870 ~ 6255150 (-)
LOC113534947 NA other downstream 100848 5331584 ~ 5339633 (-)
G77283 NA other downstream 595602 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 1624422 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 2634618 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 2686675 2684508 ~ 2753806 (-)
LOC117597406 LOC108266244 other upstream 756980 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 841068 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 1047071 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other upstream 1060458 6542433 ~ 6545953 (-)
G78159 NA other upstream 1561812 7043787 ~ 7046809 (-)

Expression


Co-expression Network