LOC113541336 (LOC108266841)


Basic Information

Item Value
gene id LOC113541336
gene name LOC108266841
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2745336 ~ 2760206 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026938258.2
tttaaattcagacattatttctttaaatcatGTGAGTGTGTCCCAGTGATatatagagattttttttattgcaaaaattGCCAAAAGTCAATCTATATTCCAGGCTGCCAGTTACTAGAATGTTACTATCAAAGCATGAGATGCTGCTGCTGGATGTAAACAACCAATTTTAAACCATGAGTTTTGAGAGTGTGTATATGCACTTAATTGGAGACTGAACAGTattgttcattaattcattcatctttagtaagttCAGAATGTATTCAGACTCGGTCATTGTGGTTTTCTGCCCCAGTCTGAGGTCTTGTGAATTCTGGAAGCAGGACTGCTTTGTGTTTGGGTCTGTTTATCCTTTCCTCAGTTCTGACCAGTCTCCCCATTCGTGCCAATGAGAAGAACCCCATAGcttgatgctgccaccaccatgcttcactgtagggatggtatTAGCCAGTTGATGAGCAGTACCTGGTTTTTGCCGTACATAGCACTTGGAGtttaatttttgtcttattaaacaAGAGAATCTTGTCTAATAAGTGTCTGCCTTTTACCATAAAGGCCTTTATGGTAGCATTTTTGAGATGATTGTCTTTCTGGCAGGTTTTCCCAAATCTGTGGAGGACTTCTTAAGCTCTGTTTGAGTGGCCATTGGGCTCTTGGTCGCCTTTCTGTCTAAGGCTCTTGTAGCTCAGTTACTGAGTTTGGCGGGTTGGAAGTGTCCTAGTGGTTCCAAACTTCTGTTGCACTATGATGGAGCCCACTGTGCACCTGGGAACATTCAAAGCTTTAGAAATAGTTTTATACCCTTGACCAGTTTGATGTCTTCACACAAGTTGATTGTGGAGAGGTACGGAAAGTTTCTTGAACTTCATTGCTTGTGGGGACCTTATACATACAGGTGTGTGCATTTCTAAATCATGTCCAGTCAATTAGATTCACCACAGGTAGACTCCAGTCAGGTTCCAAAGACATGGCAAGCTATTCAATGCAAACAGGATGCACACGAGTTCAATTTGGAGTGCCTTAGCCAAGGGTCTGAACACTTATCTAAGAGAGATTTAGGTCTTTCATTTTGAATAAGTTTGCAAAgatttctaaaaacatgtttttgccaTGTCATTGTAGATTCTTGTGTAGATGAATGtctaaaaagtacatttaatccAGTTTAACTTAAATCTATAACTCAATAATGTGTACAATAACTGATGGGGTTGGAATAATTTCAAAACTCaatgtattttattgcattGACCATGCCATAAAACATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGAACAAGCAGGAGCTTTCACTGACCAAGCAGGAGCTTTCACTGACCATGCAGGAGCCTTTGGGTGCTTTCATTGTAAAGTGCACTGTTCACTCCCGTCTCCCCAAAATGTAACCATCGTCTCCTTTAATCTGGAGCACAAGCTCACGTGGACACCAGGTCCTGGCACAGCAGCCTTCACACACTTCAGAGTGCAGAGCTATAATCAGAAGAGGAAGCTCTGGATTTCAGTGAAGAGCTGTTCTGATGTACAAATTGGCGAGTCATGTGATTTGACCAAATCTTTCAAGGAAATGTTCGGTGTTTATCAAGCCCGAGTGCAAGCATTTAATCAGGTCCAGGAATCCAACTGGACCACATCGAAATTCTTTACTCCCCTGCTGGACACAACTCTGGGTCCTCCACTTGTGTCGCTGACCGGTTGTGGAAACTGCCTCCTCCTGAAACTCAGTCCACCAGCCAGTGTGGAGCAAAACCATGACCCACTGACCAACTTTTTTCAAGAGTACACTGTCACTGTGTCCAGGACTAGAGACAAAGCACAGTTTGGTATGAAGGCATCCAATGGAGAGAATTTGATCAACTACCTAGAGCCGGGAGTGGAGTACTGCATCACGGCCACTGCAGTAACAAGCTTTAAAAACCTTGCTCTTCCTTCTGAACCTCACTGCACCTACACAAGTCCACAGCCGTTCAACACAGtggccatgtttttgaGCGCACTGTGCGCAGTCTTCCTCTTGGTGTTGCTCCTCTGTGCAGCTCTGAACTACACCGGCCAGCTCGGTAACCTCCACACACCACTcccaagagctttagtgagttTCTTACCTTTGGTGGAAAGAAGGTGGGAAACTTAAGAAGTGCTGTTGCGTTATTGATTTTAACACGGACATGATCCAACACCCGTTTTATTAAGAAACAGCGTTCATGTAAGGGGTGAGGTGCtcttaatgaaaaataatgaaatatgaagCTTTTGCTGATCTCTCTCTGCAAAACATTCCatgtttctctcattctttgtGTGGAGGGTCTTCCAAACTCATAAGACACAGAAGAGGCTGCTATTTCAGAATTTTTGTCAAGTAGAAGATGTTAGAAAAGGTTCTTTGGGGGACTTATTTTTGATACTTTATTTTGGCTTTTCTTTAGTACAAGAacattgtaaaaataaagaactaaaaaaattagaagacaaacattattttcatcAATTATTTTCAGTCAGTAGCTTcctacatcatacatcatacagaGTCATTCCAATTTAAGGCCAATGTTGCAGTAGGTGGGTTGCATTACATTTAGATATATCAGTTGGAGTGTTTTTGTCATAGAAACTTTTTGCTGTGAATGTAATCAATTTCTCCAAagttaacataaa
>XM_026938266.2
ttttaaattcagacattatttctttaaatcatGTGAGTGTGTCCCAGTGATatatagagattttttttattgcaaaaattGCCAAAAGTCAATCTATATTCCAGGCTGCCAGTTACTAGAATGTTACTATCAAAGCATGAGATGCTGCTGCTGGATGTAAACAACCAATTTTAAACCATGAGTTTTGAGAGTGTGTATATGCACTTAATTGGAGACTGAACAGTattgttcattaattcattcatctttagtaagttCAGAATGTATTCAGACTCGGTCATTGTGGTTTTCTGCCCCAGTCTGAGGTCTTGTGAATTCTGGAAGCAGGACTGCTTTGTGTTTGGGTCTGTTTATCCTTTCCTCAGTTCTGACCAGTCTCCCCATTCGTGCCAATGAGAAGAACCCCATAGcttgatgctgccaccaccatgcttcactgtagggatggtatTAGCCAGTTGATGAGCAGTACCTGGTTTTTGCCGTACATAGCACTTGGAGtttaatttttgtcttattaaacaAGAGAATCTTGTCTAATAAGTGTCTGCCTTTTACCATAAAGGCCTTTATGGTAGCATTTTTGAGATGATTGTCTTTCTGGCAGGTTTTCCCAAATCTGTGGAGGACTTCTTAAGCTCTGTTTGAGTGGCCATTGGGCTCTTGGTCGCCTTTCTGTCTAAGGCTCTTGTAGCTCAGTTACTGAGTTTGGCGGGTTGGAAGTGTCCTAGTGGTTCCAAACTTCTGTTGCACTATGATGGAGCCCACTGTGCACCTGGGAACATTCAAAGCTTTAGAAATAGTTTTATACCCTTGACCAGTTTGATGTCTTCACACAAGTTGATTGTGGAGAGGTACGGAAAGTTTCTTGAACTTCATTGCTTGTGGGGACCTTATACATACAGGTGTGTGCATTTCTAAATCATGTCCAGTCAATTAGATTCACCACAGGTAGACTCCAGTCAGGTTCCAAAGACATGGCAAGCTATTCAATGCAAACAGGATGCACACGAGTTCAATTTGGAGTGCCTTAGCCAAGGGTCTGAACACTTATCTAAGAGAGATTTAGGTCTTTCATTTTGAATAAGTTTGCAAAgatttctaaaaacatgtttttgccaTGTCATTGTAGATTCTTGTGTAGATGAATGtctaaaaagtacatttaatccAGTTTAACTTAAATCTATAACTCAATAATGTGTACAATAACTGATGGGGTTGGAATAATTTCAAAACTCaatgtattttattgcattGACCATGCCATAAAACATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGAACAAGCAGGAGCTTTCACTGACCAAGCAGGAGCTTTCACTGACCATGCAGGAGCCTTTGGGTGCTTTCATTGTAAAGTGCACTGTTCACTCCCGTCTCCCCAAAATGTAACCATCGTCTCCTTTAATCTGGAGCACAAGCTCACGTGGACACCAGGTCCTGGCACAGCAGCCTTCACACACTTCAGAGTGCAGAGCTATAATCAGAAGAGGAAGCTCTGGATTTCAGTGAAGAGCTGTTCTGATGTACAAATTGGCGAGTCATGTGATTTGACCAAATCTTTCAAGGAAATGTTCGGTGTTTATCAAGCCCGAGTGCAAGCATTTAATCAGGTCCAGGAATCCAACTGGACCACATCGAAATTCTTTACTCCCCTGCTGGACACAACTCTGGGTCCTCCACTTGTGTCGCTGACCGGTTGTGGAAACTGCCTCCTCCTGAAACTCAGTCCACCAGCCAGTGTGGAGCAAAACCATGACCCACTGACCAACTTTTTTCAAGAGTACACTGTCACTGTGTCCAGGACTAGAGACAAAGCACAGTTTGGTATGAAGGCATCCAATGGAGAGAATTTGATCAACTACCTAGAGCCGGGAGTGGAGTACTGCATCACGGCCACTGCAGTAACAAGCTTTAAAAACCTTGCTCTTCCTTCTGAACCTCACTGCACCTACACAAGTCCACAGCCGTTCAACACAGAACATCCGCAAGACTCGTgtctcaggacagaggagtttatgctttgcgtTTTCTCAAAaccatcaacaagtggagaaaatggggcaccacagtaaCAGTACCAAGAGCAAgatgtccctccaaaactgACAAATGGACAAGAAGAAAACCTATCAGGGAGACTGctaagagacctacagcaacattaaaggagctgcaggaatatctgataagtagtggtcactccctgcatgtgacaacaatctctcatattcttcacatgtc
>XM_026938275.2
tggacgttccccaacatccactgacgaaggtgcaactgacgtggtgctggtgtacaatttcccctatgtatggagacttttgggacaccctgtagattaTATTTAGTAGTTAAAGTTAGAAGTAAATGTATGTATTACGATGGTAGGAGCGGTTAAAGTTATGAGACGTTTTCATAATTAACCTTCCCTAGTTTTAAATCTGTGTGCTAATCTACTGGaaatataaatttgaaaatgaaaatataatatgtatataataccATAATGATCATCATTCTTGAAACAGCTGAATGTCTtagaacaatacaaaaaaaaaaaacttttggatTAACTGAAAGTTAAGAAATGACATGTTAATGAAATGAGTAAAGTAGAAAAGAGAAATGATATTAGTAAAACTGCTGTAATGCCAACTTCACATGcatatatggtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgatctCAGTACACAGGGAGGGACTTGTGGGGAAATGGAAACTTAGTTTTCCCCAGcaccaaaacaaacccatcttCTGGTGGGTTTAACACACACTAGTTCACACATTGCACTCATGcagaaacgcacacacacacacacacacacacacgttaaataGTAACAAACACCCACACTGCGGTCAGCCAGGATGAATTGCTCGCGACAGCAGGGGATACTGAGAGTGtggacaatttttttctttgtaatacaGGAAGTGCACTGTTCACTCCCGTCTCCCCAAAATGTAACCATCGTCTCCTTTAATCTGGAGCACAAGCTCACGTGGACACCAGGTCCTGGCACAGCAGCCTTCACACACTTCAGAGTGCAGAGCTATAATCAGAAGAGGAAGCTCTGGATTTCAGTGAAGAGCTGTTCTGATGTACAAATTGGCGAGTCATGTGATTTGACCAAATCTTTCAAGGAAATGTTCGGTGTTTATCAAGCCCGAGTGCAAGCATTTAATCAGGTCCAGGAATCCAACTGGACCACATCGAAATTCTTTACTCCCCTGCTGGACACAACTCTGGGTCCTCCACTTGTGTCGCTGACCGGTTGTGGAAACTGCCTCCTCCTGAAACTCAGTCCACCAGCCAGTGTGGAGCAAAACCATGACCCACTGACCAACTTTTTTCAAGAGTACACTGTCACTGTGTCCAGGACTAGAGACAAAGCACAGTTTGGTATGAAGGCATCCAATGGAGAGAATTTGATCAACTACCTAGAGCCGGGAGTGGAGTACTGCATCACGGCCACTGCAGTAACAAGCTTTAAAAACCTTGCTCTTCCTTCTGAACCTCACTGCACCTACACAAGTCCACAGCCGTTCAACACAGtggccatgtttttgaGCGCACTGTGCGCAGTCTTCCTCTTGGTGTTGCTCCTCTGTGCAGCTCTGAACTACACCGGCCAGCTCGGTAACCTCCACACACCACTcccaagagctttagtgagttTCTTACCTTTGGTGGAAAGAAGGTGGGAAACTTAAGAAGTGCTGTTGCGTTATTGATTTTAACACGGACATGATCCAACACCCGTTTTATTAAGAAACAGCGTTCATGTAAGGGGTGAGGTGCtcttaatgaaaaataatgaaatatgaagCTTTTGCTGATCTCTCTCTGCAAAACATTCCatgtttctctcattctttgtGTGGAGGGTCTTCCAAACTCATAAGACACAGAAGAGGCTGCTATTTCAGAATTTTTGTCAAGTAGAAGATGTTAGAAAAGGTTCTTTGGGGGACTTATTTTTGATACTTTATTTTGGCTTTTCTTTAGTACAAGAacattgtaaaaataaagaactaaaaaaattagaagacaaacattattttcatcAATTATTTTCAGTCAGTAGCTTcctacatcatacatcatacagaGTCATTCCAATTTAAGGCCAATGTTGCAGTAGGTGGGTTGCATTACATTTAGATATATCAGTTGGAGTGTTTTTGTCATAGAAACTTTTTGCTGTGAATGTAATCAATTTCTCCAAagttaacataaatataaatatt
>XM_034304742.1
ttaaattcagacattatttctttaaatcatGTGAGTGTGTCCCAGTGATatatagagattttttttattgcaaaaattGCCAAAAGTCAATCTATATTCCAGGCTGCCAGTTACTAGAATGTTACTATCAAAGCATGAGATGCTGCTGCTGGATGTAAACAACCAATTTTAAACCATGAGTTTTGAGAGTGTGTATATGCACTTAATTGGAGACTGAACAGTattgttcattaattcattcatctttagtaagttCAGAATGTATTCAGACTCGGTCATTGTGGTTTTCTGCCCCAGTCTGAGGTCTTGTGAATTCTGGAAGCAGGACTGCTTTGTGTTTGGGTCTGTTTATCCTTTCCTCAGTTCTGACCAGTCTCCCCATTCGTGCCAATGAGAAGAACCCCATAGcttgatgctgccaccaccatgcttcactgtagggatggtatTAGCCAGTTGATGAGCAGTACCTGGTTTTTGCCGTACATAGCACTTGGAGtttaatttttgtcttattaaacaAGAGAATCTTGTCTAATAAGTGTCTGCCTTTTACCATAAAGGCCTTTATGGTAGCATTTTTGAGATGATTGTCTTTCTGGCAGGTTTTCCCAAATCTGTGGAGGACTTCTTAAGCTCTGTTTGAGTGGCCATTGGGCTCTTGGTCGCCTTTCTGTCTAAGGCTCTTGTAGCTCAGTTACTGAGTTTGGCGGGTTGGAAGTGTCCTAGTGGTTCCAAACTTCTGTTGCACTATGATGGAGCCCACTGTGCACCTGGGAACATTCAAAGCTTTAGAAATAGTTTTATACCCTTGACCAGTTTGATGTCTTCACACAAGTTGATTGTGGAGAGGTACGGAAAGTTTCTTGAACTTCATTGCTTGTGGGGACCTTATACATACAGGTGTGTGCATTTCTAAATCATGTCCAGTCAATTAGATTCACCACAGGTAGACTCCAGTCAGGTTCCAAAGACATGGCAAGCTATTCAATGCAAACAGGATGCACACGAGTTCAATTTGGAGTGCCTTAGCCAAGGGTCTGAACACTTATCTAAGAGAGATTTAGGTCTTTCATTTTGAATAAGTTTGCAAAgatttctaaaaacatgtttttgccaTGTCATTGTAGATTCTTGTGTAGATGAATGtctaaaaagtacatttaatccAGTTTAACTTAAATCTATAACTCAATAATGTGTACAATAACTGATGGGGTTGGAATAATTTCAAAACTCaatgtattttattgcattGACCATGCCATAAAACATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGACCATGCAGGAGCTTTCACTGAACAAGCAGGAGCTTTCACTGACCAAGCAGGAGCTTTCACTGACCATGCAGGAGCCTTTGGGTGCTTTCATTGTAAAGTGCACTGTTCACTCCCGTCTCCCCAAAATGTAACCATCGTCTCCTTTAATCTGGAGCACAAGCTCACGTGGACACCAGGTCCTGGCACAGCAGCCTTCACACACTTCAGAGTGCAGAGCTATAATCAGAAGAGGAAGCTCTGGATTTCAGTGAAGAGCTGTTCTGATGTACAAATTGGCGAGTCATGTGATTTGACCAAATCTTTCAAGGAAATGTTCGGTGTTTATCAAGCCCGAGTGCAAGCATTTAATCAGGTCCAGGAATCCAACTGGACCACATCGAAATTCTTTACTCCCCTGCTGGACACAACTCTGGGTCCTCCACTTGTGTCGCTGACCGGTTGTGGAAACTGCCTCCTCCTGAAACTCAGTCCACCAGCCAGTGTGGAGCAAAACCATGACCCACTGACCAACTTTTTTCAAGAGTACACTGTCACTGTGTCCAGGACTAGAGACAAAGCACAGTTTGGTATGAAGGCATCCAATGGAGAGAATTTGATCAACTACCTAGAGCCGGGAGTGGAGTACTGCATCACGGCCACTGCAGTAACAAGCTTTAAAAACCTTGCTCTTCCTTCTGAACCTCACTGCACCTACACAAGTCCACAGCCGTTCAACACAGCACTgagaaaaggcaaaaaaaaaccaaacaaacaaacaaaaaaacgctAGCCTACAACAGCTGAGCTCATCAGCAAGACACAGAACCTCTGCAATGTGTGAGAGAACGgaaatctttttca

Function

NR:

description
PREDICTED: interferon alpha/beta receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026938258.2 True 2760 mRNA 0.41 6 2747570 2760205
XM_026938266.2 False 2340 mRNA 0.43 6 2745336 2760206
XM_026938275.2 False 2034 mRNA 0.41 6 2747560 2756225
XM_034304742.1 False 2195 mRNA 0.43 6 2748277 2760204

Neighbor

gene id symbol gene type direction distance location
crfb4 LOC108266840 coding downstream 2116 2734184 ~ 2743220 (-)
LOC113545730 LOC108266839 coding downstream 13185 2714012 ~ 2732151 (-)
LOC113545737 NA coding downstream 33058 2704360 ~ 2712278 (-)
il1rl1 NA coding downstream 64436 2666856 ~ 2680900 (-)
LOC113540058 LOC108266598,LOC108413855,LOC101471943,LOC107700103,LOC100693874 coding downstream 222951 2481594 ~ 2522385 (-)
LOC113540598 NA coding upstream 44 2760250 ~ 2772389 (-)
crfb1 NA coding upstream 15634 2775840 ~ 2799002 (-)
tyw5 tyw5,LOC107725219,LOC107728297 coding upstream 63610 2823816 ~ 2829821 (-)
c5h2orf69 c6h2orf69 coding upstream 159100 2919306 ~ 2920007 (-)
nabp1a nabp1,nabp2,LOC107718374,LOC106575791,LOC108255000 coding upstream 168615 2928821 ~ 2953801 (-)
G76325 mink1,LOC108427066 non-coding downstream 186184 2556506 ~ 2559152 (-)
G76333 NA non-coding downstream 214344 2530654 ~ 2530992 (-)
G76093 NA non-coding downstream 294387 2449719 ~ 2450949 (-)
G76060 NA non-coding downstream 444396 2300721 ~ 2300940 (-)
G76057 NA non-coding downstream 470697 2271867 ~ 2274639 (-)
LOC117597440 NA non-coding upstream 133170 2893376 ~ 2897204 (-)
G76400 stk17b non-coding upstream 154194 2914400 ~ 2917047 (-)
G76455 NA non-coding upstream 175875 2936081 ~ 2936563 (-)
G76462 NA non-coding upstream 205060 2965266 ~ 2966533 (-)
G76570 NA non-coding upstream 832612 3592818 ~ 3595411 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 681038 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 941691 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 1070763 1674484 ~ 1674573 (-)
trnat-agu_8 NA other downstream 1071151 1674112 ~ 1674185 (-)
trnar-ucu_6 NA other downstream 1082727 1662520 ~ 1662609 (-)
LOC113541352 c6h21orf62 other upstream 40800 2801006 ~ 2805863 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 1026750 3786956 ~ 3816059 (-)
G77283 NA other upstream 2079754 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 2571378 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 3478749 6238955 ~ 6253346 (-)

Expression


Co-expression Network