lims2 (LOC108261084,LOC108440488,LOC105898085)


Basic Information

Item Value
gene id lims2
gene name LOC108261084,LOC108440488,LOC105898085
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1988540 ~ 1998073 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947298.2
TGCTAGTACCTATTTTGGTGATGATGGCATCAGTCTATTTGTAGTGAAGCACAGGGGGAAGTGATCTGCCTGTTTTCAGACTCTTACAAAACTGTTTTCTCACAGTGCCACAGATGAGCCCAATCCTTTTGGATAACTTCAAGTAACCTGACTGACTTTTGTATTGTAACCAACATGGAGGCACAGAAACGAGGAATTCCGGCTTCAATTCCTGAGAACGAAGAGCTCATAGAGGTGCAGATTTATGGGATCCAGGACAGGCAAAATGGTGGAGAAGCCGAAGTGCCTCTCTCGAAATCTCAGAGAAGACGTAGTGATGTGAAAGTCTATAAAGAGTTTTGTGACTTCTATGCTCGCTTTAATATGGCAAACGCCCTTGCTAATGCTATTTGTGAACTTTGCAAAGCTGGCTTCACTCCTGCTGAGAAAATTGTAAACAGTAATGGGGAGCTGTATCATGAGCAGTGCTTCGTGTGTGCACAGTGTTTCCAGCAATTTTCAGAAGGGTTATATTATGAGTTTGATGACCGAAAATACTGTGAGCATGATTTCCACATGCTCTTTGCTCCTTGTTGTAATCAGTGTGGGGAGTTCATCATTGGTCGTGTTATTAAGGCCATGAACAATAGTTGGCACCCAGAGTGTTTTTGCTGTGATATCTGCCACACTGTGCTTGCTGATGTTGGTTTTGCAAAGAATGCAGGCAGACACCTGTGTCGTCCATGCCACATCCGTGAAAGAGCTTGTGGCCTTGGCAAGTATATTTGCCAGAAGTGTCACACCATCATCGATGAACAGCCGCTCATCTTCAAAAATGATCCTTACCACCCTGATCACTTTAACTGCAACAACTGTGGTAAGGAACTCACTGCTGATGCCAGGGAGCTAAGGAATGAGCTGTATTGCTTGCCTTGCCATGACAAGATGGGCGTGCCAATCTGTGGGGCATGCAGAAGGCCGATAGAGGGCAGAGTGGTGAATGCAGTGGGCAAGCAATGGCATGTTGAGcaTTTTGTGTGTGCCAAGTGTGAGAAACCTTTTCTAGGCCATCAGCATTATGAACGCAAAGGCCTGGCTTATTGCGAGACCCACTACAATCTGctCTTTGGAGATGTCTGTCACCACTGCAATCGTGTCATCGAGGGAGAAgTCATTTCAGCACTGAATAAAGCCTGGTGCATCAACTGCTTTGCCTGTTCCACCTGCAGTTCTAAGCTGACCCTCAAGGACAAGTTTGTGGAGCTTGATCTGAAGCCTGTATGCAAACAGTGCTATGAAAGAATGCCAACGCAGCTGAAGTACCGTCTAGCTAAGCGTGAACATGACTCCAAGGACAGAAGAAAGAAGATTGGTATCTGTCTGTAAAGTTCTCCTTTTAACTGgcATAGTGCAATCCTCATATGGAAATGTACCACGTGTGGATATTTTTGCTATCTCAAGACCTTCAGATTTTCCCCCAGTCTATTGTGTGGACATATACTTGTtgaaatatatatgaaatgttCAGTTGCATGAATGAGTGTAAGTGTTTTTTAGTGGTTTGCTATAACCTGTGACATGTACGTTTCTTTACCTCATGCACCATAATGATACATATCAATGCATTTTTTAGGTTATTAATAGGGGTTTATGGGTTCCCAACCAAGGATGCCCATTACCGTGAATATATGCATACAGATGatataaaaagtgtacacaGCCCCGTgtaaaattgcaggtttatgtgatgtaacaaaatgaaaccaagaaaaatcatgccagatctttttccacatttaatgGGATATAACAACTAACAACATTCAAGTGAACAACCTATAGAAAATATttagggaaaaagagagaaagaacaagctGACtgtaacctggttgcacaagtttacaagggatgtgtagactttttatatccactgtgaCAGAGGTTCCTAAAGTGGGGTCCCCCCAGGGTCCAATGAAGCATAGCTGGTGGctgcaatttttaaatttagttgaAGTGGTCGAAATCACAAACCACCATTTCAAAGTTATATTTATCATTGAGATCTTATAGTTATTAATCTATTTGACtggttattttaattaaatgggCTTTATCCAAACCTCAGTTGCTCAAAAGTATGTAGGCCTACATATACTGTggacttggacctaatgtgttgtGTCAGTGAAAATGTCAGGAATAAATAGCCAggatattattttacacatttaaataatgattaaataatggCTAACATTTGAGTAGTTGGACTATGTTCATAAAATGCTGTGTACTGTGGGGCCTctgtagaatttattttataaagacgTCACTGAGtacaaaaagtttaaaagctTCTGCCTTATGACACTATTGACCACATGCTGAGTGgaactacatttaaaaattaaaaacacattgtgATGGAA

Function

NR:

description
PREDICTED: LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

GO: NA

KEGG:

id description
K23354 LIMS1_2, PINCH1_2; LIM and senescent cell antigen-like-containing domain protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947298.2 True 2409 mRNA 0.41 11 1988540 1998073

Neighbor

gene id symbol gene type direction distance location
ranbp2 LOC108261082,LOC108440489 coding downstream 2501 1950132 ~ 1986039 (-)
cops8 cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920 coding downstream 117047 1858262 ~ 1871493 (-)
trim63b trim63b,LOC100194566,LOC100505419 coding downstream 124750 1862153 ~ 1863790 (-)
mlphb LOC108261129 coding downstream 241509 1723257 ~ 1747031 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027 coding downstream 364491 1615900 ~ 1624049 (-)
LOC113546994 LOC108261078 coding upstream 71474 2069547 ~ 2080413 (-)
LOC113540088 LOC108191725,LOC101885398,LOC107661227 coding upstream 236737 2234810 ~ 2246620 (-)
LOC113540058 LOC108266598,LOC108413855,LOC101471943,LOC107700103,LOC100693874 coding upstream 483521 2481594 ~ 2522385 (-)
il1rl1 NA coding upstream 668783 2666856 ~ 2680900 (-)
LOC113545737 NA coding upstream 706287 2704360 ~ 2712278 (-)
G75947 NA non-coding downstream 42364 1945973 ~ 1946176 (-)
G75926 NA non-coding downstream 63287 1913131 ~ 1925253 (-)
G75925 NA non-coding downstream 71102 1911196 ~ 1917438 (-)
G75927 NA non-coding downstream 73811 1914017 ~ 1914729 (-)
G75880 NA non-coding downstream 114871 1849237 ~ 1873669 (-)
G76013 NA non-coding upstream 116117 2114190 ~ 2114599 (-)
G76057 NA non-coding upstream 273794 2271867 ~ 2274639 (-)
G76060 NA non-coding upstream 302648 2300721 ~ 2300940 (-)
G76093 NA non-coding upstream 451646 2449719 ~ 2450949 (-)
G76333 NA non-coding upstream 532581 2530654 ~ 2530992 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 184895 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 313967 1674484 ~ 1674573 (-)
trnat-agu_8 NA other downstream 314355 1674112 ~ 1674185 (-)
trnar-ucu_6 NA other downstream 325931 1662520 ~ 1662609 (-)
trnat-agu_7 NA other downstream 338414 1650053 ~ 1650126 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other upstream 49706 2047779 ~ 2064298 (-)
ifngr2 NA other upstream 686435 2684508 ~ 2753806 (-)
LOC113541352 c6h21orf62 other upstream 802933 2801006 ~ 2805863 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 1788883 3786956 ~ 3816059 (-)
G77283 NA other upstream 2841887 4839960 ~ 4844879 (-)

Expression


Co-expression Network