edar (edar)


Basic Information

Item Value
gene id edar
gene name edar
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 232575 ~ 257446 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304279.1
GCTTTCGtatcctgagagagagagagagagagagagagagagagagaaaccccTCACACTCCCACTCCCACGCCGCATGGATTTCTGAGAGTTTCTGCATGTAGCTCAGAGTTTAAAGCGTAACACtcgagaagaagaagaagaaagaaagaaagaaagaagaaggagaagaaggagaagattTTCACATAGTCGCTCACAGCAAGGCTCCGTCTCCTCCTGCAGGCTTTCATCTCAGGAGGGACGTGATGGCCCGAAAGATACCAACAGTTGAATCTTGCCTCCTTTCCTTTCTATTGgccTCCAGTGTGTATCCGCTGAGGGCTGAATACTCCAGCTGTGGAGAAAATGAGTTTTATaaccacagcagcagcagctgtcGGCCGTGTCCACAGTGCCAACCGGGACAGGAGCCATACAtgaacTGCGGCTACGGCGTTAAGGACGAAGACTACGACTGTGTGTCGTGCCCTCCAGGGAAATTCTCCAGGGGAAAATATGAGATTTGTCGTCGTCATAAAGACTGCAACGCGCTGTACAGAGCCACGGTGCTCACACCGGGCACGAGGGAGAGCGACGCCGAGTGTGGACCCTGTTTACCCggGTATTACATCTTGGAAAATCGTCCCAGAAACATCTACGGCATGGTGTGTCATTCCTGCCAGAACGCTCCACGGAACACCAAAGAGTgtaTGCGAACGACCCCCGTTTCGTCGAACCGTGGCTCGGGAATATCGTCCACCAGCACCACCACGTTCCCCCACGCCGAGAAAGATCCAACGGGGCAAGGTCACCTAGCAACAGCCCTCATCATCGCCATGTCGACCATCTTCATCATGGCCATCGCCATAGTGATGATCATCATGTTTTACATCCTGAAAGCAAAGCCGAGCGGCCAAGcatgctGTTCAGGCCAGATGGTGAAAACCATAGAGGCTCCAACCAACaagcaggaggagaaaaaagaagctCAAGagaatgCCGTAATATTCACGGAGAAGGACGAGTTCAAGCCTCCTCCAACAAAAGCAGTAAAAAGCGAAAACGACGCGTCGTCTGAGAACGAGCAGCTGCTGAGCCGCAGCATCGACAGCGATGAAGAAGCGGCGCAGGAGAAGCAGGGAGCCACCGATCTTTGCCTCTTATCTCTCGTTCATCTCACTCGAGACAAGACCTGCTCGAGCAACACCATcaacaacaccatcaacaccaccgtcaacaacaacaacaactgcagcaacaacagcagaactATGGGGATTCACAGTCGAAGGAAAAAAATCCTGGAGTTGTACGCCAAAGCGTGCGGTGTTGCCGAGGGTGTGAGTCCGGTCGAGTTGCCCTTCGACTGCCTGGAGCGAACGAGCCGCATGCTGAGCACCACCTACAGCGCAGAGAAGGCGTTAGTCAGGACGTGGCGTCACCTGGCCGAGAGCTTTGGATTAAAACGTGACGAAATCGGAGGGATGACGGACGGCATGCAGCTCTTCGACCGCGTCAGCACGGCCGGATACAGCATCCCGGACCTGCTAGCTCGACTCGTCCAGATCGAGAGGTTAGACGTGGTCGAGGCGCTATGCTTCGATATTCTCGGAGCGCCCCCTTCTGGCCAGCATCTGACGATTTCTTCACGTTGCGCTAGTGTTTAAGAGACCCGAGATCCCACAAACTAAGCGGCAATGAAGAAAAATCCTCTCCAGCGCTTCTGTGGTGAGATTCTCAGAGTGTCAGAAAGAGCAGCGCCCCCTTCTGGCCATCATTTTTATCCCGTTTAGACTTTTCGATTGCGGCTGTCGCAAAATTCTTCTTTGAAAAGtccaaaaaaagaacaatgttgTGCTGGACACCCAGAATTACGGGCCTCTTCTTCACCAAACGATGTTATTTTTCATCCTGAATTAAGAAAATGAGAGGTTCGACAAATTCAAGAATTGTGTGCAAAGTTTCTTAAGAATCTTTTTCATCTTACAATGAAGTATTTTGTCTGAAACGTCCTGTTTCTCGTGACGTTCTCCACAATTAGTCCAacttctacttttttttatttcacatttaggATGCTGATATAAATTGATGTTAACAATCCTGATAGCTACAGATGTCAGACCATGttatagcttaaaaaaaaaaaacgaaagtaCATGTGTATCTATGCAGCATTTTAACTGAAAGATCATTTGAATTGGTTTTTACTTGTATTTAAAAGTGTGATTTTCATTTCACAACGATCGTTAGACGACGGTCGTCCCTGCGCTGCCTTCCAAACAGCAGATCTTCAGAACGGACCCTCGGTATTTTGAAGTATGCGCGATCACAATATTGCGTGTCGAATATCGCAATATGTCGTATAAAAGATTATCGACAcgtctaatatatatattttatagttatattgtGAGACGTATGAGATAACAAAAATGTTTCTTAATGACTTCAGATTTTTGTGGACCAAATGATGGACTGAGaaatgaaactgtgtgtgtgtgtgtgtgtgatgcccttGTGGCCATGGCTAACTCTCTGGTTCTTACCCTAATTTGCTGAAATTAGTGGATTTATGACTTTCGGTATAAAGTGCCTGCGATTTCCAGCACCTCGttaactttataaaaaaaaa

Function

symbol description
edar Predicted to enable signaling receptor activity. Acts upstream of or within dermal bone morphogenesis and fin development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including epidermal cell; integument; mouth; pectoral fin skeleton; and pelvic fin bud. Human ortholog(s) of this gene implicated in ectodermal dysplasia 10A and ectodermal dysplasia 10B. Orthologous to human EDAR (ectodysplasin A receptor).

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member EDAR

GO:

id name namespace
GO:0060348 bone development biological_process

KEGG:

id description
K05162 EDAR; tumor necrosis factor receptor superfamily member EDAR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304279.1 True 2617 mRNA 0.47 12 232575 257446

Neighbor

gene id symbol gene type direction distance location
LOC113524366 LOC108261406,LOC108270753 coding downstream 58216 164750 ~ 174359 (-)
LOC113524367 LOC108266218 coding downstream 76296 136834 ~ 156279 (-)
LOC117597326 LOC108266219,LOC108266898,LOC108266218,LOC108266876,LOC108258194 coding downstream 91282 138938 ~ 141293 (-)
LOC113524322 LOC108266876 coding downstream 102812 50306 ~ 129763 (-)
LOC113524317 LOC108273544 coding upstream 64800 322246 ~ 354605 (-)
trappc2 trappc2 coding upstream 155127 412573 ~ 416058 (-)
gpm6bb gpm6b,LOC108414227,LOC105898107,LOC103023481,LOC100694635 coding upstream 175841 433287 ~ 458683 (-)
fancb fancb coding upstream 233034 490480 ~ 501207 (-)
arsh LOC108266883 coding upstream 418073 675519 ~ 685478 (-)
LOC117597330 NA non-coding downstream 146654 83870 ~ 85921 (-)
G75037 NA non-coding downstream 169287 62798 ~ 63288 (-)
G74827 NA non-coding downstream 186706 44484 ~ 45869 (-)
G74822 NA non-coding downstream 197132 35050 ~ 35443 (-)
G74818 h2afx,LOC106534936,LOC107386469,LOC104950138,LOC106516344,LOC106527800,LOC100693699,LOC105929328,LOC107677420 non-coding downstream 205679 13659 ~ 26896 (-)
G75183 NA non-coding upstream 159291 416737 ~ 417747 (-)
G75195 NA non-coding upstream 174073 431519 ~ 434836 (-)
G75201 NA non-coding upstream 223622 481068 ~ 481964 (-)
G75240 NA non-coding upstream 303907 561353 ~ 561963 (-)
G75332 NA non-coding upstream 372998 630444 ~ 701572 (-)
nms pdcl3,nms other downstream 31563 195031 ~ 201012 (-)
G75076 NA other downstream 69998 162214 ~ 162577 (-)
G74824 LOC108263794,LOC108263798 other downstream 188229 43731 ~ 44346 (-)
G74815 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107723971 other downstream 200536 18934 ~ 32039 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other upstream 66017 323463 ~ 330490 (-)
LOC113524348 LOC108266920 other upstream 115121 372567 ~ 374644 (-)
tmsb4x NA other upstream 433634 691080 ~ 719115 (-)
frmpd4 frmpd4 other upstream 472146 729592 ~ 765991 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other upstream 600958 858404 ~ 864607 (-)

Expression


Co-expression Network