LOC113524367 (LOC108266218)


Basic Information

Item Value
gene id LOC113524367
gene name LOC108266218
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 136834 ~ 156279 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304300.1
TGCTTCTCCAACCGCCTGAaataatgaagaagaaaaagacccTACAGTTTTGTCGCCTGAACAGCTTTAGCCAGGCTAATCATCactttaaataatttctgaCAGAGTTTTGCAGTTGCAGTTCGAtggaattaaaaattaaagcacGTTATTGTGTCTGTTTTTGAGGATTTAAAACGTCGTTCTGCTTTAAAACCCTGAGGTGTTATAATGAGTTCAGCAGGAGACAGACAGCGCTCCTCCAGGAAGTCTCGGGCTCCTGATCCTGCTCCCTCACAGCTGTGTGAGGACGTGAAAACAGAGACTTCAGATGGAGGAACATTCGACGTGTCAGAAGTGAAGAAAGAGGAGACGCTGGAGCTGAACATCTACAACCATGGAGACGACGTTGACAACACACCTGAAGTTATCTCCATTAAAGAGGAAAATCCTGACAATAAAGACTACCTCTacTGTGAGATTTGCAAATCCTTCTTCTTCAACAAGTGTGAGGTTCACGGACCACCCCTCTTCATCCCTGATACTCCTGTTCCCATGGGAATCCCTGACCGAGCCAGACAAACTCTTCCTCCTGGACTAGAGATTCGGAAGTCCGGTATTCCTGACGCAGGCCTGGGAGTGTTTAATAAGGGGGAGAGTGTTCCAGTAGGCGCACACTTCGGACCCTACCAGGGAGAGCTGGTAGACAGAGAGGAAGCCATGAACAGTGGCTACTCCTGGGTGATATGCAGGAGCAGGCAGTATGAAGAATACATAGATGCCAAAAGAGAAATGCATGTGAATTGGATGCGGTATGTGAATTGCGCACGTAATGATGAAGAACAGAATCTTGTGGCTTTTCAGTATCGAGGGGGAATTCTGTATCGTTGCTGTCGACCCATTAACCCAGGACAGGAGctgttgctgtggtatgaagAGGAGTACTCCAAAGAGCTCAGTCCTGCGTTTGACTACCTCTGGAACAAAAAGTGCTCCACAAATGAAGCAAACAACGGTCTGTTGCAAGTCTTTTCCTGCTCTGCATGCCCTCTTTACTATGCATCTCAAATTTACCTCGACAAACACATCCAGAGATGCCACCATGAAGAGTATGTGAAACTGCGGGAATCAGGAGAGATTAAACATGAACTTCACATCCCCTACAAAGGCTCCAGTAGTCAGCCAGCATCATCTGATACTCGCAGTTCTGACACTTCTCAGAATGATATACAGAAGGACATTCACCACTGTTCAgactgtggaaagagttttactcaTCAGAATGCCCTCAAAACACACCAgtgcattcacacaggagaaaaaccACATCACTGCTCACTGTGTGGAAAGAGTTTCTATCAGTGGAGCAACTTCGAacgacaccagcgcattcacacaggagagaagccatatcactgctcacagtgtggaaagagttttactcaTCAGAGTGCTCTCCAACGACAccagcacattcacacaggagagaagccgtatcactgctcacattgTGGTAAGAGATTTACTCAACAGAGTCATCTCCAAAGACACCAGcatattcacacaggagagaagccgtttcactgctcacagtgtgaaAAGAGTTTTAATCAACAAGGTGATCTCCAacgacaccagcgcattcacacaggagagaagccatatcactgctcacgatgtgagaagagttttaatcgACAGGATCGTCTCCAACAACACCAgagcattcacacaggagagaagccatatcactgcccacagtgtgggaagagttttaatagACAGGATCGTCTCCAAAGACACCAGCAtgttcacacaggagagaagccatatcacCGTTCACAAGGTGGACAGACATTTACTCAAGAGAGTACTCTACAACACCACCAgagcattcacacaggagagaagccatatcattgctcacagtgtgggaagagttttactagCCAGAGTAATCTTCGaaaacaccagcgcattcacacaggagagaagccatatctttgctcacagtgtgggaagagttttactaaCCAGTGTAATCTCAGAAAGCAccagcacattcacacaggagagaagccctTTCAGTGTTCAAAGTGTGAGAAAAGTTTTAATCGACAGAGTAATCTCCAACAACACCAGCGCcttcacactggagagaagccatatcactgctcacagtgtggcaAGAGTTTTGCAGCCAAGGGTAATCTACAAACACATCAGCGCAATCACACAGGCGAGAAGCCGTATCattgctcacagtgtgggaaatGTTTTACTTACCAGAGTCATCTCCAAATACACCAGCGctttcacacaggagagaaaccctatcactgctcacagtgtgggaagagtttccACCAGCAGAGTACTCTCCAAGtccaccagcgcattcacactggagaaAAGCCATATCACTGCTCCCAGTGTGGGAAGTGCTTTAATCGACAGAATCATCTTCAGacacaccagcgcattcacactggagagaagccgtatctttgctcacagtgtggaagGACttttactcaTCAGAATGCCCTTAAAACACACCAgtgcattcacacaggagaaaagccgtatcagtgctcacagtgtggaaaagGTTTTACTCAACAAAGTAATCTCCGCAAacatcagcgcattcacacaggagagaagccgtatcactgctcgcAGTGTGGGAAGAATTTTACTCATCAGAGTCATCTCCAAAGACAccagcacattcacacaggagagagaccgtatcactgctcacattgTGGTAAGAGATTTACTCAACAGAGTCATCTCCAAAGACACCAGCATATtcatacaggagagaagccgtttcactgctcacagtgtggaaagagttttaatcGTCAGGGTACTCTCCTAGTccatcagcgcattcacacaggagagaagccgtatcactgctcacagtgtgagAAGAGTTTTCCTGACCAGAGTAATCTCCGAAAACACCAGCGcgttcacacaggagaaaaatcGTGTCACTGCTCActgtgtggaaagagttttactcaACAGAGTGATCTCCATCGACACGAAcgcattcacactggagaaAAGCCGTATTTCTGCTCCCAGTGTGGCAAGAGTTTCACTCAGCAGAGTAATCTCCATCTACACCAACGCATTCACATAGGAGAGAAGCCATATaactgttcacagtgtgggaagagttttactcaaCAGAGTACTCTCCAAAAacatcagcgcattcacacagaaGAGAAGCCCTAtaactgctcacagtgtgggaagagttttacttaTTCGATTTCATTTAAGGCCCACAAGTGCACTAACACGGAGCCACTGAATTTATCAGATTAAACATTTAGTGCAGTGATTAATATTATAATGCTTGCTTTTGATCTTAGATGGGTATACATGTAAAAGACTTGTCgaaataattcaataatgccaattatgaaaaattattaacatgGATTTTATATTCGATGCATTGTTTACTTAACCAACAACAGAAATGTGAGAGCACAGAGGCTTCTATCCCTGGGAAGAATATAATGCCATAGTGAAGCTGCGGCACCACAGTGAAGGGGACGTCACCCCTGTTGTACTACTCCACTCATAGAGAGTTCCACAGTTCATAGGAATTCGTCTGTATGCTGCTTAAACTGCTAGatcttcagagagagagagtgtaagagTGCATGAGTTTGTGTCTGAATTCCAAACGTtagaaaagctgtttttttgacACAGCAGTGCATCTGGCTAAAAGCTGTAAAGGTTATAACTGTATTTGTTTCTTAGGATAACAACTACTGGTTTTTCTATATATGAACATAACAGTGGAAGATAATGCTGTGCATCTGAATTGTATCTCCCACTGGGACATGTACAAATAAAAGACGAGACTTAAGACAGA

Function

NR:

description
PREDICTED: zinc finger protein 850-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304300.1 True 3895 mRNA 0.45 8 136834 156279

Neighbor

gene id symbol gene type direction distance location
LOC113524322 LOC108266876 coding downstream 7071 50306 ~ 129763 (-)
LOC113524366 LOC108261406,LOC108270753 coding upstream 8471 164750 ~ 174359 (-)
edar edar coding upstream 76296 232575 ~ 257446 (-)
LOC113524317 LOC108273544 coding upstream 165967 322246 ~ 354605 (-)
trappc2 trappc2 coding upstream 256294 412573 ~ 416058 (-)
gpm6bb gpm6b,LOC108414227,LOC105898107,LOC103023481,LOC100694635 coding upstream 277008 433287 ~ 458683 (-)
LOC117597330 NA non-coding downstream 50913 83870 ~ 85921 (-)
G75037 NA non-coding downstream 73546 62798 ~ 63288 (-)
G74827 NA non-coding downstream 90965 44484 ~ 45869 (-)
G74822 NA non-coding downstream 101391 35050 ~ 35443 (-)
G74818 h2afx,LOC106534936,LOC107386469,LOC104950138,LOC106516344,LOC106527800,LOC100693699,LOC105929328,LOC107677420 non-coding downstream 109938 13659 ~ 26896 (-)
G75183 NA non-coding upstream 260458 416737 ~ 417747 (-)
G75195 NA non-coding upstream 275240 431519 ~ 434836 (-)
G75201 NA non-coding upstream 324789 481068 ~ 481964 (-)
G75240 NA non-coding upstream 405074 561353 ~ 561963 (-)
G75332 NA non-coding upstream 474165 630444 ~ 701572 (-)
G74824 LOC108263794,LOC108263798 other downstream 92488 43731 ~ 44346 (-)
G74815 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107723971 other downstream 104795 18934 ~ 32039 (-)
G75076 NA other upstream 5935 162214 ~ 162577 (-)
nms pdcl3,nms other upstream 38752 195031 ~ 201012 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other upstream 167184 323463 ~ 330490 (-)
LOC113524348 LOC108266920 other upstream 216288 372567 ~ 374644 (-)
tmsb4x NA other upstream 534801 691080 ~ 719115 (-)

Expression


Co-expression Network