LOC113524322 (LOC108266876)


Basic Information

Item Value
gene id LOC113524322
gene name LOC108266876
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 50306 ~ 129763 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304648.1
CTGGAGAAGAAAAAGCCGCTGCAGGTTTTTCGCCTGAACATCTTAAGCTAACTGAGCCAATCATCTTTACATTAACATATTTCTAATAGAATTTACAGCTGCCGTTATATATGATAccgttaaaaataaaagcacgtTATTGTGTCTATGTTTGAAGTTTCGTTCTGCTTTAAAACCCTGAGctgttataatgagtTCAGCAGGAGACAGACAGCGCTCCTCCAGGAAGTCTCGGGATCCTGATCCTGCTCCCTCACAGCTGTGTGAGGACGTGAAAACAGAGACTTCAGGTGGAGGAACATCAGATTCAGAGGTTTCCCCTGTGGACCAGCAGAATGGAGGAGTCCATATGGAGCTCAGACCTCACTGTGTGAAGAAAGAGGAGACGCTGGAGCTGAACATCTATAACTATGGAGATGACGTTGACAACACACCTGAAGTCATCTCCATTAAAGTGGAAGATCCTGAGAATAAAGACTACCTCTACTGTGAGGTTTGCAAATCCTTTTTCTTCAACAAGTGTGAGGTTCACGGACCGCCCCTCTTCATCCCTGATACTCCTGTTCCCATGGGAGTCCCTGACCGAGCCAGACAAACTCTTCCTCCCGGACTAGAGATTCGGAAGTCCGGTATTCCTGACGCAGGCCTGGGAGTGTTTAATAAAGGGGAGACTGTTCCAGTAGGCGCACACTTCGGACCATACCAGGGAGAGCTGGTAGACAGAGAGGAAGCCATGAACAGTGGCTACTCCTGGGTGATATACAGGAGCAGCCAGTGTCAGGAATACATAGATGCCAAGAGAGAGACATATGCAAACTGGATGAGGTATGTGAATTGTGCTCGTAATGATGAAGAGCAGAATCTTGTGGCATTTCAGTATCAAGGGGGAATTCTGTACCGTTGCTGTCAACCCATTGACCCAGGACAGGAGCTCCTGGTGTGGTATGAAGAGGAGTACGCTAAAGATCTTGGCCCTGCATTTGATTCCCTCTGGAACAAAAAGTGCTCTGCAAATGaagTAAACAACACTCCGTTGCAAGTCTTCTGCTGCTCCTTGTGCCAACTTTCCTACTCCTCTCAAATTGACCTCCACAAACACATCCGGAGATGCCATTACGAAGAGCATGTAAGACTGCAGAAATCAGAAGAGATTAAACACAAGATTCTGCCCATAAAAGGCCAGAAAACCTCATCTACCACTCTCTGCTCTAACACCGctcacaaaaaaatgcagaaggAAATTCACCACTGTACAGattgtggaaagagttttactcaTCTGAGTGCTCTCAAATCACACCAGCGCAATCACACAgcagagaagccgtatcactgctcactgtgtggaaagagttttacttATCAGAGTGGTCTCAGaacacaccagcgcattcacacaggagagaagccgtatcactgctcagagtgtgggaagagttttacgcAACAAGGTACTCTCCAGACACACCAGAGCaatcacacaggagagaagccgtatcattGCTCACaatgtgggaagagttttgcaTACCAGAGCCATCTTCAAatacaccagcgcattcacacaggagagaagccatattgctgctcacagtgtgggaggAGGTTTAATCAACAGAGTGCTCTCCAAAGACACCAGCGccttcacacacaacaaaatctgcatcactgctcacagtgtgggaagagttttactcagCTGAGTAATCTCCAACAACATCAACggattcacacaggagagaagccatttaactgctcacagtgtgggaagagttttaatcgACAGAATCATCTCCATCGACATCATCGCATTCACACTCAAGaaaagccgtatcactgctcccTATGTCGGAAAAGTTTTGCTGATGGAGGTAATCTCAAAAGACACCAGCgtattcacacaggagaaaaaccgtatcactgctcagatTGTGGGAAGAGCTTCACTGACCAAAGTACACTCCGacaacaccagcgcattcacacaggagaaaagccgcatcactgctcacagtgtgggaagagttttactcacCTGAGTACTCTGCAAACACAccagctcattcacacaggagagaagccgtatcactgctcacagtgtgggaagagcttTAATCGACCGAGTGCTCTCCAACAACACCAGCGCagtcacacaggagagaaggtgtatcactgctcacagtgtgggaatcGGTTCAGTGACCGAGGAACTCTTCAAGtccaccagcgcattcacacaagAGAGAAGCCATAtaactgctcacagtgtgggaagagttttattaTAGAAAGTGCTCTCCGACGACATCAGCGTATTCATTCTGGAGATAGGCTGTattactgctcacagtgtggacaGAGATTCACTTATTTAAGTATGTTTAGAAACCATGGGTGCAATACCACAGAGCCATTACATGACCTGAAGttgtcaaatGCAGTCAGGCCTCCTAAAGTCAAGTATCTAACAATGGCTGTAATGTGCCTCGTAGATGAATGCCTGGTGAAGTTTGATCTGGAGATCTTTAGAGGAAAAGTCCAGTCCATAGAGGAGAGATTCACCTTTCTAAAGGGTGAGGCAGCTATGTCCACCAAGATCGCCCAAGAGCCTGGTGTGGGATCCCCCTTTTGCTTTGAGCCATACAGACCTGTTATAATGAGTTCAGCAGAAGACAGGCAGCAGTCTCAGGCTCCTGATCCTGCTCCCTCACAGCTGTGTGAGGATGTGAAAACAGAGACTTCAGGTGGAGGAACATCAGATTCCGAGGACCAGCAGAATGGAGGAGTCCATATGGAGCTCAGATCTCGCTGTGTAAAGAAAGAGGAGACCCTTGAGCTGAGCATCTACAACCATAGAGACGACCTCAACAACACGCCTGATGTTATCTCCATTAAAGAGGAAGAAGCTGACAAAGACTACCTCTACTGTGAGGTTTGCAAATCCTTCTTCTTCAACAAGTGTGAGGTTCACGGGCTGCCCCTCTTCATCCCTGATACTCCTGTTCCCATGGGAGTCCCTGATCGAGCCAGACAAACTCTTCCTCCTGGACTAGAGATTCGGAAGTCCGGTATTCCTGACGCAGGCCTGGGAGTGTTTAATAAGGGGGAGACTGTTCCAGTAGGCGCACACTTCGGACCCTACCAGGGAGAGCTGGTAGACAGAGAAGAAGCCATGAACAGTGGATACTCCTGGGTGATATACACTAGAAGCCAGTGCCAGGAATACATAGATGCCAAGAGAGAAATGTATGCTAATTGGATGAGGTACGTGAATTGTGCTCGTAATGATGAAGAGCAGAATCTTTTGGCGTTTCAGTATCGAGGTGGGATTCTATATCGTTGCTGTCAACCCATTAACCCGGGACAGGAGCTCTTGGTGGGGTATGAAAAAGAGTATGCCGAAGATCTTGGCCCTACATTTGACTCACTCTGGAGTAAAAAGTGCTCCAGAAATGAAGTAAACAACGCTCTGTTGCAAGTCTTCTCCTGCTCTTTGTGTCCACTTTCCTATACATCTCAAATATATCTCCATAAACACATCCAGAGATGTCACTATGAGGAATATGAGATTGAATGTAACAAAGGCTCTGTTAGTCACCAAACATCACCTGGCACTCTCGACTCCAACGTCTCTGTCAAAGAAATGCAGAAGGCAGTTCaccactgctcacagtgtgggaaatGTTTTTCTTACCAGAGTCATCTCCAaacacaccagcgcattcacacaggagagaagccatatcacTGCTCAGAGTGTAGGAAAAGTTTTTCTCATCAGAGCGCTCTCCACCGACACCAGCgaattcacacaggagagaagccgtatcactgctcacagtgtggaaagagttttaatcAACAGAGTACTCTCCAaacacaccagcgcattcacacaggagagaaaccgtatcactgctcacagtgtgggatgAGTTTTAATCGACAGGGTGATCTCCTACGACACctgcgcattcacacaggagagaagccctATCACTGTTCACAATGTGGGAAGAGATTTAATCGACAAAGTACTCTGCAACAACAccagcacattcacacaggaaAGAAGCCCTATCAGTGCtcagagtgtgggaagagttttactcacCAGAGTAATCTCCAAAAACACCAgagcattcacacaggagagaagccgtattcatgctcagagtgtgggaagagttttaatcacCAGAGTAAGCTTCGAAAACACCAGCACcttcacactggagagaagccatatcactgctcacagtgtggaaagagctTTGCGGCCAAATTTAATCTCCAAACACACCAGCGCaatcacacaggagagaagccgtatcactgctcacagtgtgggaagagttttacgtTCCAGAGTCATCTCAGaaaacaccagcgcattcacactggagagaaaccatatcactgctcacagtgtgggaagagatTTCATCAACAAAGTACTCTCAAAGTCCACCAGcgtattcacacaggagagaagccgtatcactgctcactgtGTGGGAGGAGCTTTACTCACCAGTGTAATCTCCGAAAACACCAgagcattcacacaggagagaaggcATATCTTTGCTCACATTGTGGGAGGAGCTTTACTCGAAAGGGTGATCTACGAAAACACCaacgcattcacacaggagagaagccgtatcagtgcTCAGAGTGTGGGAAAAGTTTTACACAACAAAGTACTCTCCAACGACATCTgcgcattcacactggagagaagccgtatcactgctcccagtgtgggaagagttttacagCCAAGGGTAATCTCCAAACGCACCAGCGCaatcacacaggagagaagccgtatcactgctcacagtgtgggaaatTTTTCTCTTACCAGAGTCATCTGATaacacaccagcgcattcacacaggagagaagccgtatcagtgctcacagtgtgggaaatGTTTTTCTTATCATAGTCATCTCCAaacacaccagcgcattcacacaggagagaagccgtatcactgctcacagtgtgggaagagtttcacTTATTCAATTACATTTAAGTCTCACAAGTGCATTAAAATAGAGCTGTTACATAATTTTTGTTTGTCAGATTAAATAtgagtattattattgttttggcTTAAAATGATCTGTGTAAACTGTGGATTTTTGTATCCTAGCAGCTCTGACCAGTTTGGTCATTCTCCCCTGAGCACTCTCATCCACAAGGTGTTTCAACCTGCAGACCCttcactcacaggatgttttttgtttttcgcaccattctgtgtaaactctagagactgttgtgtgtgaaattcccaggggatcagcagtttctgaaatactcaaacc

Function

NR:

description
PREDICTED: zinc finger protein 345-like isoform X1

GO: NA

KEGG:

id description
K20796 PRDM7_9; [histone H3]-lysine4 N-trimethyltransferase PRDM7/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304648.1 True 5347 mRNA 0.46 17 50306 129763

Neighbor

gene id symbol gene type direction distance location
LOC113524367 LOC108266218 coding upstream 7071 136834 ~ 156279 (-)
LOC117597326 LOC108266219,LOC108266898,LOC108266218,LOC108266876,LOC108258194 coding upstream 9175 138938 ~ 141293 (-)
LOC113524366 LOC108261406,LOC108270753 coding upstream 34987 164750 ~ 174359 (-)
edar edar coding upstream 102812 232575 ~ 257446 (-)
LOC113524317 LOC108273544 coding upstream 192483 322246 ~ 354605 (-)
G74827 NA non-coding downstream 4437 44484 ~ 45869 (-)
G74822 NA non-coding downstream 14863 35050 ~ 35443 (-)
G74818 h2afx,LOC106534936,LOC107386469,LOC104950138,LOC106516344,LOC106527800,LOC100693699,LOC105929328,LOC107677420 non-coding downstream 23410 13659 ~ 26896 (-)
G74820 LOC108261568,LOC108441237,LOC108415981,LOC108435734,LOC108412211,LOC106024139,LOC108414221,LOC108261485,LOC108261826,LOC108262582 non-coding downstream 24514 12445 ~ 25792 (-)
G75183 NA non-coding upstream 286974 416737 ~ 417747 (-)
G75195 NA non-coding upstream 301756 431519 ~ 434836 (-)
G75201 NA non-coding upstream 351305 481068 ~ 481964 (-)
G75240 NA non-coding upstream 431590 561353 ~ 561963 (-)
G75332 NA non-coding upstream 500681 630444 ~ 701572 (-)
G74824 LOC108263794,LOC108263798 other downstream 5960 43731 ~ 44346 (-)
G74815 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107723971 other downstream 18267 18934 ~ 32039 (-)
G75076 NA other upstream 32451 162214 ~ 162577 (-)
nms pdcl3,nms other upstream 65268 195031 ~ 201012 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other upstream 193700 323463 ~ 330490 (-)
LOC113524348 LOC108266920 other upstream 242804 372567 ~ 374644 (-)
tmsb4x NA other upstream 561317 691080 ~ 719115 (-)

Expression


Co-expression Network