arsh (LOC108266883)


Basic Information

Item Value
gene id arsh
gene name LOC108266883
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 675519 ~ 685478 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304668.1
atggccaaaaGCAGTTGCTCTGGATTGTTTATCCTAACTGTTCAAAGTCGAAGTGTTACAAATGCTGAAGATGCCACCAAACCCAACTTCATACTCATGATGGTTGACGATCTGGGGATCGGGGACATTGGTTGCTATGGGAACGATACGATCAGAACCCCGAACATCGACAGATTAGCGAAGGAAGGTGTGAAACTGACTCAGCACGTTGCTGCTGCTCCTCTCTGTACACCAAGCAGAGCTGCGTTCATGACTGGACGTCACGCTTTGCGTGCAGGTCTCGGAAGTACTGGAAGAGTGCAGGTGATCCTGTTCCTCGGTGCTTCAGGAGGACTTCCTCCCAACGAAACCACATTTGCCAAACTCCTACAAAAGCAGGGTTACACCACAGGAATTGTGGGAAAGTGGCACTTGGGCGTGAGCTGTAAAAGCAGGAACGATCACTGCCACCATCCCAACAGCCACGGTTTCGACTACTTTTATGGTCTTCCCTTCACCCTGTTTAACGGCTGCAAACCTGGAAACAGCGCCGATGTGCTAGGTGACCTTCAGGAGCTGCTGTGGCACATTTTCACGCTGTTAGCGCTGGCAGTGTTAACACTAATCACGGCTAAAATCACTGGAATTCTGGAAATCAGCTCCAGGATGCTCGTGTTCCTAGTTGTTGTTTACATTCTTGGCTTTTTGACCTGGTATATTCCATTTGCGTTCTTACAAACCTGGAATTGCATCCTCATGAGGAACCAGGATGTAGTGGAACAACCAGTGAACCTGGACACACTAACTGAAAAGCTAATGAAAGAGGCGGAGCAGTTTGTTGAGAGGAACCAGAACAGACCCTTTTtgctgtttctgtctctgcctcACGTCCACACGCCGCTGTTCATCTCCAAACAGTTTGCAGGAAAAAGCAAACATGGCCTTTACGGAGACAACGTGGAGGAAGTGGACTGGATGATTGGCAGAATGGTGAAGATTGTCGAGAAGCTGAAACTTTCTGAAAGGACTCTGATGTACTTCACGTCTGATCACGGAGGAGACATCTGGATTTCAGACTCACATGGCCGTATTGGAGGCTGGAATGGAATTTATCGAgGTGGTAAAAACATGGCTGGCTGGGAAGGTGGCATTCGTGTTCCAGGAATATTCCGCTGGACAAATCGTCTTCCAGCCGGAAAAATTGTTAATGAGCCAACAAGTTTAATGGACATTTTTCCTACCGTAGTGAATCTAGCTGGAGGACAGCTGCCTAATGACAGAATTCTGGATGGTCATGACCTGCTGCCGCTGATGGAGGGAAAACTAAAGCGTTCGAAACATGAGTTCATGTTTCACTACTGTGGTGTTCATTTGAGCGCCGTCCGCTGGCATCCTCCTGacaTTTTCAAAGTGCACTTCTTCACTGCGAATTGCAACGGCACACAAACATGCTTGTGCCACGGcgacatcatcacacaccacgACCCGCCACTTGTCTTCgatgtgacctctgacccctcgGAGGCAGTGCCCTTGACGGCGGAAACCACACCACGTCACGGCGAGGTGCTGCAGCGGGTTCGAGATGCCGTGCAGGAACACCAGCGGACACTGACGCTCCCTGAGAACCAGCTGTCATGGCCGAATGCGCTGTGGAAACCATGGTTACAGCCATGCTGCGGCGTTTTCCCCTTCTGCTCCTGCTCGGACACTTGAAGGACGTCATGACAGCATGCACATGTTTGGACGGAGAAAACTTTCTTAGTTCCGTTTGAGACAAACTGACGCGTGTAAACTTTAATAAACGCTGCACAAGACTAATTTTTTACGTGCTCAGCCCAGTTCCTGTAATAAACACATCAACGTTATccatga

Function

NR:

description
arylsulfatase D-like

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K12374 ARSD_F_H; arylsulfatase D/F/H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304668.1 True 1854 mRNA 0.49 10 675519 685478

Neighbor

gene id symbol gene type direction distance location
fancb fancb coding downstream 174312 490480 ~ 501207 (-)
gpm6bb gpm6b,LOC108414227,LOC105898107,LOC103023481,LOC100694635 coding downstream 216836 433287 ~ 458683 (-)
trappc2 trappc2 coding downstream 259461 412573 ~ 416058 (-)
LOC113524317 LOC108273544 coding downstream 320914 322246 ~ 354605 (-)
edar edar coding downstream 418073 232575 ~ 257446 (-)
LOC113524316 LOC108272333 coding upstream 35149 720627 ~ 724412 (-)
tlr7 tlr7,LOC108266215 coding upstream 40033 725511 ~ 729048 (-)
dct dct coding upstream 141803 827281 ~ 833892 (-)
LOC113524324 LOC108266872,LOC108260750 coding upstream 258841 944319 ~ 957738 (-)
LOC113524329 NA coding upstream 417562 1103040 ~ 1112551 (-)
LOC113524353 NA non-coding downstream 13428 660906 ~ 662091 (-)
LOC117597328 NA non-coding downstream 14800 653153 ~ 660719 (-)
G75240 NA non-coding downstream 113556 561353 ~ 561963 (-)
G75201 NA non-coding downstream 193555 481068 ~ 481964 (-)
G75195 NA non-coding downstream 240683 431519 ~ 434836 (-)
G75356 NA non-coding upstream 34027 719505 ~ 720606 (-)
G75365 NA non-coding upstream 74874 760352 ~ 760838 (-)
G75369 NA non-coding upstream 78817 764295 ~ 764555 (-)
G75372 NA non-coding upstream 81883 767361 ~ 772430 (-)
G75348 NA non-coding upstream 111344 796822 ~ 892057 (-)
LOC113524348 LOC108266920 other downstream 300875 372567 ~ 374644 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other downstream 345029 323463 ~ 330490 (-)
nms pdcl3,nms other downstream 474507 195031 ~ 201012 (-)
G75076 NA other downstream 512942 162214 ~ 162577 (-)
G74824 LOC108263794,LOC108263798 other downstream 631173 43731 ~ 44346 (-)
tmsb4x NA other upstream 5602 691080 ~ 719115 (-)
frmpd4 frmpd4 other upstream 44114 729592 ~ 765991 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other upstream 172926 858404 ~ 864607 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other upstream 234418 919896 ~ 936968 (-)
LOC113524372 NA other upstream 252534 938012 ~ 938203 (-)

Expression


Co-expression Network