tmeff2a (tmeff2,tmeff2a,LOC107670719,LOC107728299)


Basic Information

Item Value
gene id tmeff2a
gene name tmeff2,tmeff2a,LOC107670719,LOC107728299
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 2968680 ~ 3060237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304728.1
GTCACTGTGGTTATAACGGGTAGCGCGAGACGGGAATGAAAGTAAAGTGCACGCATCTCGGAGCCCAGCGGATGTTACACCCAGCTCGCGCAATGGAATTGCCTTACTGCCCCTTTTATCAGTTCTTTAGttgcctttctttttccttttaattttgaCTTCCTGGGCATCTTCTCCTCCCGGTGTTCCActatcctcctcctcatcatcatcatcttcacaatctttttttttttccttttctctctctctccatcatctcGCGCCTGCTTGCTCTTCGGTTCCGGGTGGATCCGGTGCAGTCGCGCGACTCTCGCCAGCGCTTAATGGGTCGCGGAGAATGGCCCCGTTCCGGCCTGTGAGTTGGCCTCAGTCGGTCTACAGGGGGGAAAACTGAGATGGGTTTCGCGGCGGTTTCGGCCACAGCGGAGCCTCGGCGCTCATGGAGCCGCGCTGCCAGAGACTGGCTGTGGGTCGCTGTGGTGTCACTCCTCGCTACTTTCCCCGTGCAGCGCCTCCGCGCTTTCCCGTCTTCCCTCAGCGACTGCCAGACGCCCACCGGGTGGAACTGCTCGGgtGACGATGATCGGGACACAGATCTCTTCTTGTGTGACACCAACACTTGTAAGTTTGATGGCGAGTGTCTCAGAATCGGGGACATAATAACCTGCATCTGTGACTTCAAGTGTAACAACGACTATGCCCCAGTGTGCGGCTCCAATAACAAGTTCTACAATAACGAGTGTTTGCTCCGGAGGGACGCCTGCAAACAGCAGACCGAGATCCTGGTGGTGTCTGAGGGACCCTGTCCTATCGAGGCTGGATCTGGATCTGGGGATGAAGCAGGGAACGAGGGCTCGGCTGAGAATGGACAGAAGGAGACTTCCACCTGCGATATCTGCCAGTTCGGGGCCGAGTGTGACGTGGACGCAGAGGATGTATGgtgtgtgtgcaaCATCGACTGTTCCCACATAAGCTTCAACCCGGTGTGTGCGTCAGATGGCCGCTCGTACGACAACCCATGCCAAGTGAAAGAAGCCTCGTGTCAAAGGCAGGAGCGCATCGAGGTCAAGTTCCTGGGTCACTGTCAAGGTGATATGATAACAGGAAACAAACCCGGAGATGGACACTACGCCAGAGCCGACTTGCcagagGAGAAGCCAGAAGTGTCAGAGGTGGCACGAGGAATTTACATCCCTTGTCCCGAGCACTACAAGAACTACTGCGTACATGGAGACTGTGAATACCCCAACATGCTCTCCACACCATCGtgcagTTGTCACTCAGGCTTCAGCGGCCCACAGTGTGACACCAAGGAGTACAACGTGCTGTATGTGGTGCCAGGTTCTGGAACAACACGTGCTGTCGCCTCCATGAGGTAA

Function

symbol description
tmeff2a Predicted to be an extracellular matrix structural constituent. Predicted to be involved in several processes, including basement membrane assembly; cell migration; and substrate adhesion-dependent cell spreading. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of laminin complex. Human ortholog(s) of this gene implicated in prostate cancer and urinary bladder cancer. Orthologous to human TMEFF2 (transmembrane protein with EGF like and two follistatin like domains 2).
tmeff2 Acts upstream of or within negative regulation of cell migration; negative regulation of cellular component organization; and wound healing, spreading of cells. Predicted to be located in extracellular region. Predicted to be active in basement membrane and plasma membrane. Implicated in prostate cancer and urinary bladder cancer. Biomarker of prostate cancer.

NR:

description
PREDICTED: tomoregulin-2

GO: NA

KEGG:

id description
K23608 TMEFF2; tomoregulin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304728.1 True 1382 mRNA 0.55 10 2968680 3060237

Neighbor

gene id symbol gene type direction distance location
cavin2a sdpr coding downstream 8314 2944274 ~ 2960366 (-)
nabp1a nabp1,nabp2,LOC107718374,LOC106575791,LOC108255000 coding downstream 14879 2928821 ~ 2953801 (-)
trnas-cga NA coding downstream 29278 2939321 ~ 2939402 (-)
c5h2orf69 c6h2orf69 coding downstream 48673 2919306 ~ 2920007 (-)
tyw5 tyw5,LOC107725219,LOC107728297 coding downstream 138859 2823816 ~ 2829821 (-)
dnah7 dnah7 coding upstream 573755 3633992 ~ 3745382 (-)
parp14rs1 LOC108266413 coding upstream 709997 3770234 ~ 3784393 (-)
gypc NA coding upstream 832243 3892480 ~ 3923274 (-)
cntnap5a LOC108266700,LOC108425961 coding upstream 943489 4003726 ~ 4126493 (-)
sfrp2 NA coding upstream 1229835 4290072 ~ 4294136 (-)
G76462 NA non-coding downstream 2147 2965266 ~ 2966533 (-)
G76455 NA non-coding downstream 32117 2936081 ~ 2936563 (-)
G76400 stk17b non-coding downstream 51633 2914400 ~ 2917047 (-)
LOC117597440 NA non-coding downstream 71476 2893376 ~ 2897204 (-)
G76325 mink1,LOC108427066 non-coding downstream 409528 2556506 ~ 2559152 (-)
G76570 NA non-coding upstream 532581 3592818 ~ 3595411 (-)
G76658 NA non-coding upstream 791159 3851396 ~ 3852207 (-)
G76682 NA non-coding upstream 877557 3937794 ~ 3938000 (-)
G76688 NA non-coding upstream 907636 3967873 ~ 3968077 (-)
G76794 NA non-coding upstream 945457 4005694 ~ 4005908 (-)
LOC113541352 c6h21orf62 other downstream 162817 2801006 ~ 2805863 (-)
ifngr2 NA other downstream 214874 2684508 ~ 2753806 (-)
LOC113547075 slc5a7,LOC108440498,LOC106586545,LOC106582186,LOC107733037 other downstream 904382 2047779 ~ 2064298 (-)
G75893 col6a3,LOC108262369,LOC106600155 other downstream 1165035 1797982 ~ 1803645 (-)
trnar-ucu_7 NA other downstream 1294107 1674484 ~ 1674573 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other upstream 726719 3786956 ~ 3816059 (-)
G77283 NA other upstream 1779723 4839960 ~ 4844879 (-)
LOC113534947 NA other upstream 2271347 5331584 ~ 5339633 (-)
LOC117597406 LOC108266244 other upstream 3178718 6238955 ~ 6253346 (-)
LOC117597343 NA other upstream 3262806 6323043 ~ 6324680 (-)

Expression


Co-expression Network