ints6 (ints6,LOC107567782,LOC107695579,LOC107725253,LOC107685346)


Basic Information

Item Value
gene id ints6
gene name ints6,LOC107567782,LOC107695579,LOC107725253,LOC107685346
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1271407 ~ 1282002 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304768.1
GCCCAGAGTTAAAAGAAGTGAGCGGCCAAAGAGGTTTCCAGTCTTTAAGTTGCACCGACATGAAAGTTAGGCTTATCTTTCCAACTTCCTGCCAAAAGACACTTCTTGACCCTTGTGTATCACTAATCTCTCCCCACCCAAGGGTTTATTTATGAGCTTTACTCCAGTTTAGAGCGCAGCGGGGCTGCTGTTTACATTCAGCTGACTGTTTTGTACACTTTTGAGGATGTGTAAAGgcagttagcattagcatgagtGCTAGCTAGCGGCGTGTTGACAGAAGCGACAGGAGGAGAACAAAAGAGACATTTCGGCTCATTTTTGCCTCCCTTTGGCCGATTAGCAGTGACATGTAGGAGGTGTGAGGAGAGCAGCACGATGCCTGTGATCCTGTTTCTGATAGACACGTCCGCCTCCATGAACCAGCGCTGCCACTTGGGCACTACCTATCTGGACATAGCTAAGGGTGCTGTTGAGACTTTCCTCAAGCTCAGGAGTAGGGATCCGGCGAGCAGAGGAGACAGATACATGCTAGTTTCCTTCGAGGAAGCTCCTGCCGGGATAAAGGCCGGATGGAAAGAGAGCCACGCCATCTTCATGACGGAACTGAGGAACCTGCAGGCTGTCGGCTTAACGTCGTTTGGCCAATCTTTAAGGGCCGCTTTCGATTTGCTCAACCTGAACAGATTAGTGTCAGGGATAGACAACTATGGGCAGggAAGAAACCCGTTTTTCCTGGAGCCTGCCATCATAGTGGCGATTACGGACGGAAGCAAACTGACAGGCACTGCAGGAGTGCAGGACGAGCTGCATTTACCGTTGATGACCCCGTTACCGGGCAGCGAGCTGACGAAGGAGCCGTTCCGCTGGGACCAGCGCCTTTTTTCTCTGGTGCTTCGCATTTCAGGCCACGCCCCTTTGGAGCCCGAGCCAGTGGGCGGAGTCCCGGCCGACCCCTCCCCCGTGACGCCCATGTGTGAGGTGACAGGAGgccgcTCGTACAGTGTGTTTTCTCAGCGCATGCTGAACCAGTGCCTGGAGTCTCTGGTGCAGAAGATCCAGAGCGGAGTCGTGATAAACTTTGAGAAGACGGGCCCCGACCCTGCTGAAGATGGTCCTTCAGACGTTAAATCCGGTCCCCAGCCGTGGCACAGCTGCCATAAGCTCATTTACGTGCGGCCCAATCCCAAAACGGGGGTTCCTGTTGGCCACTGGCCCATTCCTGAGTCCTTCTGGCCCGACCAGAACTCCCCCACtctgCCACCACGAATGGCCCATCCACAGGTGCGATTTTCCTGCATGGAGGCGGAGCCCATGGTCGTAGATAAGGTCCCATTCGATAAGTACGAGCTGGAGCCGTCTCCTCTAACGCAGTACATTCTGGAGAGGAAGTCACCACACACCTGCTGGCAGGTTTACGTAAGTAACAGCGCTAAGTACGGCGAGCTCGGGCAGCCGTTCGGCTACCTGAAGGCGAGTACGGCGCTCAGCTGTGTCAACCTCTTCATCATGCCCTACAACTACCCTGTGGTGCTGCCCCTCCTGGACGACTTGATTCGAGTGCACAAATTCAAGCCCACTCCGAAATGGCGTCAGGCCTTCGAGAGCTACCTGAAGACCATGCCGCCATACTACATCACGCCCCTGAGGAAGGCACTGAGGATGATGGGAGCCCCGAACCTGCTGGCCGAAAGCATGGAGTACGGCCTGAGCTACAGCGTTGCGTCATACCTGAAGAAACTCAGCCAGCAGGCGAAGGTGGAGGCGGACCGCGTGTGCGCGCTGGTAGGGAAGAAGGCGGGGCCTGATATGGGGATCAAGCTCCGCCTCCGAGGCTCTGCTATCTCGTTAGCTCACAGAAAGGATTTTGCACAGCTGCTGCACGGCATCATGGGAGATGGGCCGCTCGACATCAACCCCAAAGAGTTCTCAGGGTTCCAGCTAGCTGTGCTCAACAaggcccTGAAGCCACAGGGTCTGCGGAACCCGTATGACGTACCCAGGATTCAGCTGCTGGACCAGCTGAGCCGCATGAGGAGAAACCTCCTGAACACCAGCATGTGTGTGCTGAAGGGCCAAGACCAAGATCAGCTCCACAGCGTGCCCATAGCACAGATGGGCAACTATCAGGACTTCCTGAAacttagccccgcccccttgaGAGAGGCGGACCCAGACCAACCGAAGCGGCTGCACACCTTCGGCAACCCCTTCAAACTGGACAAGAAGGCGATGATGGTGGATGAAGCAGACGAGTTTGTGACTGGGACTCAGGGAAAAGGCAAGCGACCCATCGATACCAGCCCGCCTACTGGCGCTCCGAAAAGGAGGAGGTGCATGTCGCCATTACTGCGCCTGGGACGTGCGTACACCCCGCCCAATAAGACGCCACCCAGAGCTCCGGACGCCAATCACGCGGGCCACAGTGAATTGGAGCGGCGCCAGTGCTCAACCACACGGGCCATCTCGATTTGGAACGGGTCCCTGATTCCAACCACGTAGGCCACGTCGAATTGGAACGTGCCCCAGACTCCAATCACGTGGGCTGCCTCGAGTCCCCTGAACGGTCCCAGGAAGTGCCACCCTTGCCCCCTAACCTCGACGCAAATCAcctggaagaggaagaggacgCCGAGCAGCAGAACGGAGGACGCAATCCCGAGGAAGAGGAGCTG
>XM_034304769.1
CTCAGGAGTAGGGATCCGGCGAGCAGAGGAGACAGATACATGCTAGTTTCCTTCGAGGAAGCTCCTGCCGGGATAAAGATCTGGctgtccttctctgtctctcttctcagGCCGGATGGAAAGAGAGCCACGCCATCTTCATGACGGAACTGAGGAACCTGCAGGCTGTCGGCTTAACGTCGTTTGGCCAATCTTTAAGGGCCGCTTTCGATTTGCTCAACCTGAACAGATTAGTGTCAGGGATAGACAACTATGGGCAGggAAGAAACCCGTTTTTCCTGGAGCCTGCCATCATAGTGGCGATTACGGACGGAAGCAAACTGACAGGCACTGCAGGAGTGCAGGACGAGCTGCATTTACCGTTGATGACCCCGTTACCGGGCAGCGAGCTGACGAAGGAGCCGTTCCGCTGGGACCAGCGCCTTTTTTCTCTGGTGCTTCGCATTTCAGGCCACGCCCCTTTGGAGCCCGAGCCAGTGGGCGGAGTCCCGGCCGACCCCTCCCCCGTGACGCCCATGTGTGAGGTGACAGGAGgccgcTCGTACAGTGTGTTTTCTCAGCGCATGCTGAACCAGTGCCTGGAGTCTCTGGTGCAGAAGATCCAGAGCGGAGTCGTGATAAACTTTGAGAAGACGGGCCCCGACCCTGCTGAAGATGGTCCTTCAGACGTTAAATCCGGTCCCCAGCCGTGGCACAGCTGCCATAAGCTCATTTACGTGCGGCCCAATCCCAAAACGGGGGTTCCTGTTGGCCACTGGCCCATTCCTGAGTCCTTCTGGCCCGACCAGAACTCCCCCACtctgCCACCACGAATGGCCCATCCACAGGTGCGATTTTCCTGCATGGAGGCGGAGCCCATGGTCGTAGATAAGGTCCCATTCGATAAGTACGAGCTGGAGCCGTCTCCTCTAACGCAGTACATTCTGGAGAGGAAGTCACCACACACCTGCTGGCAGGTTTACGTAAGTAACAGCGCTAAGTACGGCGAGCTCGGGCAGCCGTTCGGCTACCTGAAGGCGAGTACGGCGCTCAGCTGTGTCAACCTCTTCATCATGCCCTACAACTACCCTGTGGTGCTGCCCCTCCTGGACGACTTGATTCGAGTGCACAAATTCAAGCCCACTCCGAAATGGCGTCAGGCCTTCGAGAGCTACCTGAAGACCATGCCGCCATACTACATCACGCCCCTGAGGAAGGCACTGAGGATGATGGGAGCCCCGAACCTGCTGGCCGAAAGCATGGAGTACGGCCTGAGCTACAGCGTTGCGTCATACCTGAAGAAACTCAGCCAGCAGGCGAAGGTGGAGGCGGACCGCGTGTGCGCGCTGGTAGGGAAGAAGGCGGGGCCTGATATGGGGATCAAGCTCCGCCTCCGAGGCTCTGCTATCTCGTTAGCTCACAGAAAGGATTTTGCACAGCTGCTGCACGGCATCATGGGAGATGGGCCGCTCGACATCAACCCCAAAGAGTTCTCAGGGTTCCAGCTAGCTGTGCTCAACAaggcccTGAAGCCACAGGGTCTGCGGAACCCGTATGACGTACCCAGGATTCAGCTGCTGGACCAGCTGAGCCGCATGAGGAGAAACCTCCTGAACACCAGCATGTGTGTGCTGAAGGGCCAAGACCAAGATCAGCTCCACAGCGTGCCCATAGCACAGATGGGCAACTATCAGGACTTCCTGAAacttagccccgcccccttgaGAGAGGCGGACCCAGACCAACCGAAGCGGCTGCACACCTTCGGCAACCCCTTCAAACTGGACAAGAAGGCGATGATGGTGGATGAAGCAGACGAGTTTGTGACTGGGACTCAGGGAAAAGGCAAGCGACCCATCGATACCAGCCCGCCTACTGGCGCTCCGAAAAGGAGGAGGTGCATGTCGCCATTACTGCGCCTGGGACGTGCGTACACCCCGCCCAATAAGACGCCACCCAGAGCTCCGGACGCCAATCACGCGGGCCACAGTGAATTGGAGCGGCGCCAGTGCTCAACCACACGGGCCATCTCGATTTGGAACGGGTCCCTGATTCCAACCACGTAGGCCACGTCGAATTGGAACGTGCCCCAGACTCCAATCACGTGGGCTGCCTCGAGTCCCCTGAACGGTCCCAGGAAGTGCCACCCTTGCCCCCTAACCTCGACGCAAATCAcctggaagaggaagaggacgCCGAGCAGCAGAACGGAGGACGCAATCCCGAGGAAGAGGAGCTG

Function

symbol description
ints6 Predicted to be involved in snRNA 3'-end processing. Predicted to be part of integrator complex. Orthologous to human INTS6 (integrator complex subunit 6).

NR:

description
integrator complex subunit 6-like

GO: NA

KEGG:

id description
K13143 INTS6, DDX26; integrator complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304768.1 True 2675 mRNA 0.57 16 1271407 1282002
XM_034304769.1 False 2218 mRNA 0.58 15 1271407 1281420

Neighbor

gene id symbol gene type direction distance location
trnal-caa_1 NA coding downstream 13151 1258142 ~ 1258256 (-)
trnaw-cca NA coding downstream 18413 1252923 ~ 1252994 (-)
trnal-cag_10 NA coding downstream 40738 1230587 ~ 1230669 (-)
trnas-uga_4 NA coding downstream 41017 1230309 ~ 1230390 (-)
LOC113524329 NA coding downstream 158856 1103040 ~ 1112551 (-)
trnan-guu_14 NA coding upstream 5051 1287053 ~ 1287127 (-)
trnat-agu_1 NA coding upstream 7725 1289727 ~ 1289800 (-)
trnan-guu_15 NA coding upstream 9584 1291586 ~ 1291660 (-)
trnat-agu_2 NA coding upstream 11869 1293871 ~ 1293944 (-)
trnan-guu_16 NA coding upstream 13694 1295696 ~ 1295770 (-)
G75663 NA non-coding downstream 17311 1237221 ~ 1254096 (-)
G75636 NA non-coding downstream 55703 1209385 ~ 1215704 (-)
G75640 NA non-coding downstream 101714 1169459 ~ 1169693 (-)
G75628 NA non-coding downstream 131204 1135626 ~ 1140203 (-)
G75600 NA non-coding downstream 190001 1081207 ~ 1081406 (-)
G75687 NA non-coding upstream 23987 1305989 ~ 1306353 (-)
G75713 NA non-coding upstream 84380 1366382 ~ 1367066 (-)
G75719 NA non-coding upstream 93384 1375386 ~ 1377189 (-)
G75727 NA non-coding upstream 102856 1384858 ~ 1385522 (-)
G75732 NA non-coding upstream 110777 1392779 ~ 1395138 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 83908 1170709 ~ 1187499 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 112069 1145297 ~ 1159338 (-)
LOC113524372 NA other downstream 333204 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 334439 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 406800 858404 ~ 864607 (-)
trnat-agu_4 NA other upstream 166189 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 189487 1471489 ~ 1471561 (-)
G75770 NA other upstream 247068 1529070 ~ 1529513 (-)
htr2aa NA other upstream 309953 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 356383 1638385 ~ 1638458 (-)

Expression


Co-expression Network