LOC113534875 (rnf17)


Basic Information

Item Value
gene id LOC113534875
gene name rnf17
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6451364 ~ 6708475 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304921.1
TTGGgTGCATTCTCAATGTGGACCATGTGAAAAACTGTCTGGAGATCACAGATGGCAATTTTAAGCTtgtgtgtgaggaggtggCCATCCCTCCTGCTACAGAGCCTGTCAAGCGGCCAGTGAGGAGTGGAGGTTCAGGGGAAAGGAGAGGAGGCAGAGACAGCCCTCGAGTGCCCATCTCTCCTCGCCCAGCATCCCCCAAACACATCCATGCTCCAAGCCCTAATGTTATAATAGAGGAAATCATTGAGGAAACAGTTGCTGGTGATGAGAGAGATGTAATGGGCCAGGAGCCCAAGCCTACAGAGAGACAAAGGGTACAGAGGAAGAATCGCAAGGCACTGCCTGACAGGATCACTGCCTCTCAAACATTGCAGAAGTGGGTTGCAGTGACCCATATAATCAACCCAACACATTTCTATGTGCGCTATGTGATGGAGCGCAAGGCAGGAGTCTTGTTGGCCAGAAAGATTAACAGCATCTGCTCAGGAGAACAAAGCCACTTCACTGTAAAGGACCAAATCAAGACTGGAGCACTGGTGTTTGTAAAATGGAAGAACGATGTCTGGTGTAGAGCAGTGGTGTGTGAGCTGATCCAGAAGGGGTGTCTGGAGTGTGTGACTCACTGCTCTGCAAATGATGTTGCACGCCTGGAAGTGTTCTTCCTTGATTATGGCTTCTCTAAGGGACTCACCATCTCAGGTGATGATCTTGTTGggctgaatgaatgtgtgaggAGAGCTGATTCTACTCCCCAGGCAGATCTGCATCGGTGGGCCCCTCAGGCCATTAGGTGTTCCCTTAAAGACATCATTCCTTCAGACCTGGTAAAAGGTTGGAGCAGGGAAGCATCTGAAGAGATGAAGCGTGTGATCGGCTCAAGTGTTGTGGAGATGCAGGTACTCGgtgaagagagagacactctTCTGGTGGATCTGAAGAAAGTATCGATGAACACTTCACTTTCTCTGAGAGAGCACCTTGTGTACATGGAGCTTGCCAGCAGGTTCTATTCCCCTCAGGTGGCCCCTGCAGGCAATAAGACACTGCTGTTTTACCCACCTGTGTATCCCAAACTGAACACGGAGTTGAATGCTGTGGTCTCCCATGTAAACACACCATCAGACTTCTACATACAGCTAGTGGACAATATGGAGTTCCTGCTACTAAACACAAAACTGCAGAACTGTTATGGGCTTCCTGGAGTTGAAAGTGACCTTCAGATCTATTCACCTGTTCTGTCCCAGGCTTGTGTTGCCCTCTATGACAACAAGGACTGGTGCAGGGCTCAagtcacagGTTTCCCTGGTGGACGGTTGGTGGAAGTCCAATATGTAGATTTTGGCAACAGAGAAACTCTGTCTGTTAAAGACCTCAGACAGATAAAGGATGAGTTTTTTGCACTACCAGCCATGGCACTGTGGTGTTCTCTGGATAGTGTCTTGAGTGTGGGAGAAACTTGGAGCGAGGAGAGCATTGATGTGTTCCGTAAACTGACAGAACAGAAATTGGTCACTGTAGTTGCAAAAGGACTTGTGCCCGTTTCCATGGCTATGCCTGTATGTCTGTTCGAGGTCAGCGAGCATTCTACTGAGTGTCTGTCCAGCATCGGAGAAATCTTGGTCACAAAAGGGCTGGCCTCTCTAAGCAAACAAGTCTCACCTAAGAAACCTGTCCCACTGGAGCATACAGTTTGGGATCCCCCACTGGTGGAAGAGGGCCCATCTCAGAGCGAGCCAACACTTCCTACCCTTGACCCTTCAGCGCTTCAGCCCAGTTTGATACTGCCAGCTTGTCTGAAAGATGTGAAAGTGAAGGTTACCCATGTGACCTCCCCTGGAAATATCTGTGTGCAGCTGCTACAGTATGACACTCAGCTAAAGAGAATCCATGACTTGCTAAAAAAAGAATATTCTAAGTCTGAGCCACAGGAGATCGTCTGGAAAGCCAAAATGCCTTGTGCTGCTAATGTTAATGGTATTTGGGAGAGAGGAAAGGTGTGCAATGTGTCTTCCAGCAATGTTGCAGAgGTGCTGCGCTGTGACTTTGGTAATAAAGTGAACATCCACTTGAGTAACCTGAGACCTCTTCTCCCAGAGTTGAGTGGCTCCTTTCTGCTGGAGTGTTGCCTCAGTGACATAAGGCCAGCTGGTGGTTGCTCCACCTGGACGGCTACAGCGTGTGACTTTATTTCCTACTACCTCACCGGTGCCATGGCTATAATGACCATTAAGGAGCCTTCGTCTGTCAGACCGGTGCCTGTCTCTTTGTTCTGCTCCAACAGAGCAGGTCGGCATGTCAGCATAGCAGATTTCCTCATCGCTGAGGGTCTTGCTCTGAGAGAGAGGAGTGTCAAACCTGCACCCAAGTCAGAATCTGACTTGTGTGACGACGTGGGTTGTGCATTAGGTGAGACCGTGTCCTTAGAAGAAGAGACTGCGTGTGAGGAGAGCGGTCAGAGGAGTAAATCGTCAGCTCCCTCTCATACACCTTCGCCCAAACCTGCCCCACGCATCACTCCTCCTCCGGAAAGAGTGAGGACCCAGGCTTACCTACCCCCTGAGCTGCCCCCCTGCGGGGACACACGCATGAGCATCTCTGCTGTCTCTGATGATGGAGTCATCCATGTTATGACACTACAGACTGcATGTGAGTTCGAGCGATTGCAGGAGCAGCTTCAGCAGCACATTAAGACCTTGCCCAGGCAGAAGCACTATAACTGGAAGAATGTACTGGGCTGTGTTGTCATGGGCTCTGATATGCTGTGGTACCGTGGACAAGTCCAGGAGGTGATTGGAGGCTATTTGAAGGTACGATATGTGGATCAGGGGATTGTGGAGAATATTCCAGTGTGCCATGTATATCCAATGGTGCTTTGTGAGAATGTTCCTCAGCTGTGTGTGCCTTGCCAGATAAATGGGATACTTCCGGTTGGGGGGACATGGCAGTGGGACGCAGTGGCTCTTATGAAGGAGTTGTTGCTTGGCCGTATGGTCAGTGTTCATGTTATTGAGCTGCCAGATGATCCACGAGGCTTGGTTACCGTGGAGATAATactggatgggatgccactAAGCAAAATCATGATGCACCACCAGCACGCCACGTTCAGCCTGTCTGTCGGCAGCCCTGAGGATTATGTGGTGAAACCTCCAGTGCCTGATTTGGATGACTGGGACTTGAATACTGAGGGCTTGGAAGAACCCCAGACCATGTTAGGGGTGTACACTGACCTCAAACTTCCAGACAAAGGGATGTCCTGCTGGATCAAAATTAAGCATATTCGCACCCCTAACGAGGTTTTTTTGAGTGTGTTGGATACACCAGTTTATGAACAAGAACAGGAGTCTCTAGACGAAGCCCTCAGCCAAGTGAACAGTGACATTGATTCTTTGCCCCTACTGACAGACTTCCCTATTGaGGGTCCTTGTCTAGCCGAGTACAGTGATGGTAAATATTACCGTGCAAAGCTTCTAGGCTTTTCTGAGCTCAACCCCAGCATCCAGCTTCTTGTGAGACATGTGGACTTTGGCTCGGATGACATTTTGCCACTATGCAAacTACGTTGTCTTCCCAAGGCACTGCTGCGTTTCCCGTGTGAGGCGGTGTGTGTTCAGCTGGCAGGGTTCAAGCCTCCGCATCTGTGTCAAGAGACAGAACGCATTCCCTATAGGCCAGAGTGGAGCATGAAGGCCATGCTGGAGATGATCGACCTGCTGCATGGAAAATTGCGCTCTGTGGTGACGGCTGTGGAGCCACAGCCAACTGTGCTGCTGTACAACGCCGATGGAACTTTGGTCCACACTCCTCTAGTGGAGAAAGGCCTCGCTGATTATGAGTGATGAAACAGAATAAAGAAAGTTGTACTGCTGAACATGCACTTTCAGGAACACAGTTTTATGTTCTTAACCTTCTGCTGTTGAGTTTATTTTGATGGTGACATTTTAAGTTCATACAGATCCCTGGAGAAGCAGTGAAAAGCTTTTTTACTTTTGGTGCACAGTTTAGTTTAATATGGCCAGATAAAGGAAACATGCCTACAACTTAATGGATACACCGTACAGCTCCATTTAAGTGGCTggagtttat

Function

symbol description
rnf17 Predicted to enable metal ion binding activity. Is expressed in gut; pharynx; and primordial germ cell. Orthologous to human RNF17 (ring finger protein 17).

NR:

description
PREDICTED: RING finger protein 17 isoform X1

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304921.1 True 4089 mRNA 0.49 30 6451364 6708475

Neighbor

gene id symbol gene type direction distance location
mcf2lb LOC108266232,LOC108430488 coding downstream 20240 6408161 ~ 6431124 (-)
LOC113534858 LOC108266244 coding downstream 207652 6225854 ~ 6243712 (-)
LOC117597339 NA coding downstream 220172 6228208 ~ 6231192 (-)
arhgap15 arhgap15 coding downstream 969389 5440481 ~ 5481975 (-)
acvr2aa LOC108266626,LOC108412453,LOC107709421,LOC107673126 coding downstream 1292542 5115388 ~ 5158822 (-)
uggt2 uggt2,LOC108266228,LOC108430493,LOC107600415,LOC107663813,LOC107655477 coding upstream 20466 6728941 ~ 6769727 (-)
LOC113535281 oxgr1 coding upstream 135131 6843606 ~ 6845500 (-)
si:ch73-116o1.2 LOC108266255,LOC108430494,LOC107551943,LOC107600440,LOC107663912,LOC107733654 coding upstream 249371 6957846 ~ 6971100 (-)
LOC113535005 LOC108266250,LOC108266249,LOC108266251 coding upstream 517529 7226004 ~ 7230646 (-)
LOC113535006 LOC108266249,LOC108266251,LOC108266250 coding upstream 526769 7235244 ~ 7247142 (-)
G77840 NA non-coding downstream 123279 6326099 ~ 6328085 (-)
G77799 NA non-coding downstream 161353 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 169940 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 196214 6253870 ~ 6255150 (-)
G77763 NA non-coding downstream 248591 6202569 ~ 6202773 (-)
G78172 NA non-coding upstream 368946 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 476958 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 568344 7276819 ~ 7292595 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding upstream 606222 7314697 ~ 7340303 (-)
G78259 NA non-coding upstream 634031 7342506 ~ 7343664 (-)
LOC117597343 NA other downstream 126684 6323043 ~ 6324680 (-)
LOC117597406 LOC108266244 other downstream 198018 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 1111731 5331584 ~ 5339633 (-)
G77283 NA other downstream 1606485 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 2635305 3786956 ~ 3816059 (-)
G78159 NA other upstream 335312 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 740573 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 836031 7544506 ~ 7549631 (-)
G78626 LOC108266388 other upstream 1036251 7744726 ~ 7747638 (-)
G79221 NA other upstream 1956215 8664690 ~ 8665579 (-)

Expression


Co-expression Network