LOC117597446 (LOC108266891,LOC108266893,LOC108266892,LOC108266212,LOC108266242,LOC108262141,LOC108266890,LOC108266899,LOC108266894)


Basic Information

Item Value
gene id LOC117597446
gene name LOC108266891,LOC108266893,LOC108266892,LOC108266212,LOC108266242,LOC108262141,LOC108266890,LOC108266899,LOC108266894
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6593174 ~ 6606144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304922.1
TAAAACTCCTCCTATTAAGGAAGTGCTGAGTCTGAGACGACTGCAGTCCTTCATAAACAGCCTGCAGTGTTCTGCTCTGGGGAGTTTAGTTTTATTCTCGGTTTATGGAGAAATCTGAGTCTCATTTTCAGCACTGTGAAAGGAGGTGATTACTAACTGGAGCTACAAAGTCATCTGTTTAACCTGAAAGAAACCTGAAATCAGGGTGTGATTACTTTTTATCAAAGTAAAAGTGAACTCTGAACTCTTGGAcgggagagaaaaacaacagcagcaaaataaaatggctTCTAAGTTTTCAGAGGAGGATTTCTCCTGTCCTGTGTGCTGTGAAATCTTCAAGGATCCTGTTGTTCTGCACTGcagtcacagtgtgtgtaaagagtgtttGCAGCAGTTCTGGGAGACCAAAGGATCCAGAGAATGTCCTGTTTGTAGGAGGAAGTCGTCTATGTCTGAACCTCCCAAAAACCTGGCCTTAAAGAACCTGTGTGAGACTTTCTTACAGGAGAGAAGTCAGAGCTCTTCATCAGCGTCTGAAACAGTCTGCAGTCTGCACAGTGAGAAACTCAAACTCTTCTGTCTGGACGATCAACAGccggtgtgtgtggtgtgtcagACTTCAAGAAAACACACCAACCACAAATTCTGCCCCATTGACGAGAGAGCAACAGACTGTAAGGAGGAGCTGAAAACTTCACTGAAGCCCCTACAGGAGAAACTGAAGATCTTTAAAGACTGTAAACTGAGCTGGAGTCAGACTGCAGAACATATAAAGATTCAGGCCCAACACACAGAGCGGCAGATTAAAGAGGTGTTTGAGAAGCTTCACCAGTTTCTACGAGATGAAGAGGCAGCCAGGATCGCTGcactgagagaggaagaggagcagaagaGTCAGATGATGAAGGAGAAGATTGAGAAGCTGAGCAGAGACATATCATCTCTTTCAGACACAATCAGAGTCATAGAAGAGGAGATGAGAGCAGAAGACGTTTCGTTCTTACAAAACTACAAGGCCACAGTTAAAAGAGCTCAGTGCACACTGCAGCATCCAGAGGAGCTTTCAGGAGCACTGATCCATGTGGCAAAACATCTGTCCAACCTGAAGTTCAGAGTCTGGGAGAAGATGCAGCATGCTGTCCAATACAcaCCTGTAACTCTGGACCCCAACACTGTTCATCCTGAACTCATTGTATCTGATGATTTGACCAGTGTGAGACGCAGTGATGAGGAACAGAAACTTCCTGATAATCCAGAGAGATTTGATAAATATTGCTGCATCCTGGGCTCTGAGGGCTTTAACTCAGGGACACACTGCTGGGATGTTGAAGTTGGAGACTGTACAGGCTGGTTTGTGGGTGTGATGACAGAATCTGCTCAGAGGAAGGGAGAGATATTCTCCAGAAGTGGAATCTGGTGTGTGGGGTATTACAAATTTGTGGTATATAAATATGTAGCACATTCAACACCAGAGAATTTCACTCTCCTCTCAGTAGCACAGAAACTCCAGACGATCAGAGTGCAGCTGGACTGGGATAGAGGAAAGCTGTCATTCTCCGAccctctcactaacacacacatacgcactttcacacacagatttactgACACATTACTGCCATATCTATACGTTATTGGTATAGAATCTCCTCTAAAGATCCTCCCACTTCAGTGCTCTGTAAGAGTGAATCAGATCAGTTAGAGCtgatattgttttattccagTTCATTAATGAAATATTGcagattaaaacatttatattctttgtgaaagtttgtttttacagaatcactgaacagttcattgtgaaatgttttttgaaGACCTATGACGTTATTTCGACTCGTCAGTTAAATCAATATAATGTGAAAACTGGAAATATTGATAGAATATCTTATTCTGAGtcctaaaaaatataatatcttaAAATACTGACACATCTTGAAATTCCTATTTATTAAATGACTAACTCCATCTTTTTCGCACAACTTTCAGTTCAGGGCttccacaaacaaacaaaccgcaggatgaaattaaaataataaacttgtatttaaatgtagaatttgaaatctgaaatagatttaattttattg

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304922.1 True 2099 mRNA 0.41 7 6593174 6606144

Neighbor

gene id symbol gene type direction distance location
LOC113534869 LOC108266892,LOC108262141,LOC108266212,LOC108266891,LOC108266894,LOC108266899,LOC108266890,LOC108266896,LOC108266893 coding downstream 26135 6563913 ~ 6567039 (-)
LOC113534867 LOC108262141,LOC108266899,LOC108266212,LOC108266892,LOC108266894,LOC108266896,LOC108266891,LOC108266893,LOC108266890,LOC108266242 coding downstream 60534 6528585 ~ 6532640 (-)
LOC113534866 LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894 coding downstream 86384 6503829 ~ 6506790 (-)
LOC113534871 LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890 coding downstream 107599 6482345 ~ 6485575 (-)
mcf2lb LOC108266232,LOC108430488 coding downstream 162050 6408161 ~ 6431124 (-)
LOC117595670 LOC108266894,LOC108266899,LOC108266212,LOC108266890,LOC108266896,LOC108262141,LOC108266891,LOC108266892,LOC108266893,LOC108266242 coding upstream 7391 6613535 ~ 6618013 (-)
LOC117597448 epb41l5,LOC107566159 coding upstream 22827 6628971 ~ 6677161 (-)
LOC117597447 rnf17 coding upstream 102107 6708251 ~ 6715332 (-)
uggt2 uggt2,LOC108266228,LOC108430493,LOC107600415,LOC107663813,LOC107655477 coding upstream 122797 6728941 ~ 6769727 (-)
LOC113535281 oxgr1 coding upstream 237462 6843606 ~ 6845500 (-)
LOC117597449 NA non-coding downstream 56903 6533450 ~ 6536271 (-)
G77840 NA non-coding downstream 265089 6326099 ~ 6328085 (-)
G77799 NA non-coding downstream 303163 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 311750 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 338024 6253870 ~ 6255150 (-)
G78172 NA non-coding upstream 471277 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 579289 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 670675 7276819 ~ 7292595 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding upstream 708553 7314697 ~ 7340303 (-)
G78259 NA non-coding upstream 736362 7342506 ~ 7343664 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other downstream 47221 6542433 ~ 6545953 (-)
LOC117597343 NA other downstream 268494 6323043 ~ 6324680 (-)
LOC117597406 LOC108266244 other downstream 339828 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 1253541 5331584 ~ 5339633 (-)
G77283 NA other downstream 1748295 4839960 ~ 4844879 (-)
G78159 NA other upstream 437643 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 842904 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 938362 7544506 ~ 7549631 (-)
G78626 LOC108266388 other upstream 1138582 7744726 ~ 7747638 (-)
G79221 NA other upstream 2058546 8664690 ~ 8665579 (-)

Expression


Co-expression Network