LOC117597447 (rnf17)


Basic Information

Item Value
gene id LOC117597447
gene name rnf17
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6708251 ~ 6715332 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304925.1
caaAAAGAGTCGGTGATTGGCATGGCTGAAGCGGGTGAAGGGTTTAATTACTGAGTGCGGGAGGAAAAGGCAGAATGATGGACGCTGCAGTGACATGTAATAATTGTGGCTTACCGTACACATTGTCtgAGGATGAGGTTGTGGGGAGGCTGCCCCATGTGCTCTTCTGTGGTCACATCTTCTGTGTGGAGTGTCTCCGCTCTCTGGAGTGTCCTCAGGACACCGCCAACTCTGTGTCCTCCATCAGCTGTCCCGAATGCACGATGAGCACTGAAATTGGTGAGGAAGGAGTGGATGGATTGCAAGTGGATAGCAGGATAATTGGCCTTATCTATACAGCCAAGATGAACTCCAAGAGGAGGGTTCTCCATGGGGGAGTCAGACAGACAGTTCGCAGACTGAGGAGTCCAGCAGCACATCCTTCTACCCACAAGAAGCTTGCTGAAGAGggtccTGACGTGGCGAAGATTCTAAACGAAGCCCTCTGTAAAGCAACAGAAAACCTTACTACCCTGGATAGCCTGCACCAGACTCTGGTTGCAGGCATTCAGTCTCAGCTGAAGAAGGAGAGGAATCGAATCATAAAGGAAATTGACGAATGCATTGACAAGGCAATCGTCATACTACAAAGAAGACGTAGTGCACTGATGTCTGAACTGAGCTGTCTAGAGAAGCTCTTCTCAGCTGGGAGGGAGGAGTGTCAGAAACTGCAGGTGAGACGGAGAGAGCTGCGCACAGCCATTCAGAAAGCACGACATGTTCGCCAGGTCCCATTGCTGGAGACTTACTGCCATCTGGATGAGATTCTGGAGACTCTGCAGAGTCCTGTGGACACTGAATTGTACGCGATATGAGCTGCctactatac

Function

symbol description
rnf17 Predicted to enable metal ion binding activity. Is expressed in gut; pharynx; and primordial germ cell. Orthologous to human RNF17 (ring finger protein 17).

NR:

description
PREDICTED: RING finger protein 17 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304925.1 True 868 mRNA 0.50 8 6708251 6715332

Neighbor

gene id symbol gene type direction distance location
LOC117597448 epb41l5,LOC107566159 coding downstream 31090 6628971 ~ 6677161 (-)
LOC117595670 LOC108266894,LOC108266899,LOC108266212,LOC108266890,LOC108266896,LOC108262141,LOC108266891,LOC108266892,LOC108266893,LOC108266242 coding downstream 90238 6613535 ~ 6618013 (-)
LOC117597446 LOC108266891,LOC108266893,LOC108266892,LOC108266212,LOC108266242,LOC108262141,LOC108266890,LOC108266899,LOC108266894 coding downstream 102107 6593174 ~ 6606144 (-)
LOC113534868 LOC108266892,LOC108266891,LOC108266893,LOC108266242,LOC108266896,LOC108266899,LOC108266894,LOC108266212,LOC108266890 coding downstream 111563 6593534 ~ 6596688 (-)
LOC113534869 LOC108266892,LOC108262141,LOC108266212,LOC108266891,LOC108266894,LOC108266899,LOC108266890,LOC108266896,LOC108266893 coding downstream 141212 6563913 ~ 6567039 (-)
uggt2 uggt2,LOC108266228,LOC108430493,LOC107600415,LOC107663813,LOC107655477 coding upstream 13609 6728941 ~ 6769727 (-)
LOC113535281 oxgr1 coding upstream 128274 6843606 ~ 6845500 (-)
si:ch73-116o1.2 LOC108266255,LOC108430494,LOC107551943,LOC107600440,LOC107663912,LOC107733654 coding upstream 242514 6957846 ~ 6971100 (-)
LOC113535005 LOC108266250,LOC108266249,LOC108266251 coding upstream 510672 7226004 ~ 7230646 (-)
LOC113535006 LOC108266249,LOC108266251,LOC108266250 coding upstream 519912 7235244 ~ 7247142 (-)
LOC117597449 NA non-coding downstream 171980 6533450 ~ 6536271 (-)
G77840 NA non-coding downstream 380166 6326099 ~ 6328085 (-)
G77799 NA non-coding downstream 418240 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 426827 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 453101 6253870 ~ 6255150 (-)
G78172 NA non-coding upstream 362089 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 470101 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 561487 7276819 ~ 7292595 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding upstream 599365 7314697 ~ 7340303 (-)
G78259 NA non-coding upstream 627174 7342506 ~ 7343664 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other downstream 92591 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other downstream 162298 6542433 ~ 6545953 (-)
LOC117597343 NA other downstream 383571 6323043 ~ 6324680 (-)
LOC117597406 LOC108266244 other downstream 454905 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 1368618 5331584 ~ 5339633 (-)
G78159 NA other upstream 328455 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 733716 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 829174 7544506 ~ 7549631 (-)
G78626 LOC108266388 other upstream 1029394 7744726 ~ 7747638 (-)
G79221 NA other upstream 1949358 8664690 ~ 8665579 (-)

Expression


Co-expression Network