LOC117597448 (epb41l5,LOC107566159)


Basic Information

Item Value
gene id LOC117597448
gene name epb41l5,LOC107566159
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6628971 ~ 6677161 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304926.1
aaaaaacactcctaCATCTTTGGGACTTGGGGAAATTAGGTGGAAgtttgtgttggtgtgtgtggggcagCGCGGTGTTGGAGGCTGAGTGCCGGAATGGCGGAGTGCAGGCGCAGCGCGGGGCTGTGAGAGGATTGTGCTTTTCTCCGGGACTGAGACAAGCCGCTGCTGTTGGACCACATTAGAGCACAGTCATGCTGAGTTTCCTACGGCGGACTCTGGGTCGGCGCTCTGGCCGTAAGCATGCTGAGAAAGCTCGGCTCCGGGAAGCCCAgcgtgcacaaacacacatccccGCAGCCGGAGATGCCACGTCCATCATCACTTGCCGAGTGTCGCTGCTGGATGGCACGGACGTCAGTGTCGACTTGCCGAAAAAAGCCAAAGGTGAGGAGCTGTTTGACCAGATCATGTATCACCTGGATATCATTGAGAAGGATTACTTTGGTCTGCGCTTCATGGACTCAGCACAAGTGCCGCACTGGCTGGATGTGACCAAAAGCATTAAAAAGCAAGTCAAAATTGGTCCTCCGTATTGTCTCCACATGCGGGTTAAGTTTTATTCCTCAGAGCCCAACAACCTACATGAGGAGTTAACACGATACCTGTTTGTGCTGCAGCTGAAGCAGGACGTCCTCAGTGGCAAGTTAGACTGTCCCTTCGATACAGCGGTGGAGCTGGCAGCCTTCGCTCTGCAGGCTGAGCTGGGCGACTGCGACCCTGCAGAGCATGGCCTTGACCTGGTGTCGGAGTTCCGCTTTGTGCCGGAGCAGACGGAAGAGATGGAGGTGGCCATCTACAACGCCTGGAAAGAGTGCAGGGGCCAGATGCCTGCACAGGCTGAGATTAACTACCTGAACAAGGCCAAGTGGCTGGAGATGTACGGCGTTGACATGCATATGGTTAAGGCCAGAGATGGAAATGAGTACAGTTTGGGACTGACCCCCACTGGAGTGCTCGTGTTTGAGGGCGAAACCAAGATTGGCTTGTTCTTTTGGCCCAAGATCACACGGTTAGACTTCAAAAAGAATAAGCTGACcctggtggtggtggaggacgATGAACAGGGCAAAGAGCAAGAGCACACGTTTGTATTTCGCATGGACCATCCCAAGGCCTGCAAGCACTTATGGAAGTGTGCAGTGGAGCATCATGCTTTCTTCAGGCTGCGTGGCCCCGTCCAGAAGGGATCCTCCCGCTCAGCCTTCATCCGCATGGGCTCCCGTTTCAGATACAGTGGAAAGACAGAATACCAAACCACGAAGGCTAACAAAGCTCGGCGGTCGGCTACTTTTGAGAGACGGCCCAGCCGCCGCTACTCCAGAAGAACTATGCAGAACAGAGGTCCCATTGTTCCCAAATCCCCAGAgaACCAGAATAATGGAGTGAGTCCCAGTCAAGAGACAAAGTATGTCCAGTCTCAGCCTGCATGGCCCGGAGCGTCCCCGGTCTCTGGCCAGCCCTTGGTGCAGGGTCCATTGACCATTGAAGCTCTCCCTAGGAGTCCTGGCAGCAGCCAATCAGGGAAGAGGAGCATGCCTGACGTGGGAGACCTGCTGGAGACCTGCGTGGACGACCTCATCCGGACACCTGTTCCCATGGCGACGGCAGGCTCGTCTGAAGAGGCGGGGCCTAGTGCGGCTCTCTCCACCCCCAGCACAGTCACTGAGAACCTGTCTCTCactgCAGCTCGACTGAAGCAGCTGGAGATCGAGAGCACACCGACCTCTGCTCCTGCTCAAGCTAACGTCAATGTCAACATGAACAACCAGGAGGACGTGCTGAAGCTGACAGAGAAGAGTCTGAGCAGTGTGAGCAGCAGTCCTGTCCTGAGCCAGCTAAAGGCACCAGATGAGCTCAAGAGCAACATCCTCAAAGCCCAGGCAGAGGCAGTGCTCAGGGGCACAAGAGAGGAGATTGGAGTCACAGGGGAAAAGAACTGTAACCTTCAGGAAGCAGTAGCCAGCCTTGAAGTGAAAGCAGATGAGTTCATCTCCTCTTCGTCCAGCGTGCCAGCTGAACCAGTGAATGAAGCCTCCTCAGCCAAGGTGCAGCCGCCCAAACCCATCATTACACCTCGATGGATCATTCCAGCAGCTCCACAGACTGGCACCTTTACTAACGGCCTCCTAGAGCTTGACAAAGCAAAGATGGCAGCACAGCATAGCGAAGGGGGCGCTCCTGCCTCCCTCCCTCAtctttctcacactcacactcacaatGTGATTGCCACCAGCATTGTGGCTCACCATCcgagaaacaaccacagacccAGGGGCCTGCTGACCACTGAACTCTAGGAAACTCACGTCCAGCAGTATCAACTACCTGAAAACTTTACCCtgtttccccacacaca

Function

symbol description
epb41l5 Predicted to enable cytoskeletal protein binding activity. Acts upstream of or within several processes, including animal organ development; maintenance of epithelial cell apical/basal polarity; and positive regulation of Notch signaling pathway. Located in bicellular tight junction. Part of protein-containing complex. Is expressed in integument; nervous system; and pronephros. Used to study proteinuria. Orthologous to human EPB41L5 (erythrocyte membrane protein band 4.1 like 5).

NR:

description
PREDICTED: band 4.1-like protein 5 isoform X5

GO:

id name namespace
GO:0045747 positive regulation of Notch signaling pathway biological_process
GO:0001822 kidney development biological_process
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0034629 cellular protein-containing complex localization biological_process
GO:0021744 dorsal motor nucleus of vagus nerve development biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
K23963 EPB41L5; band 4.1-like protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304926.1 True 2359 mRNA 0.55 25 6628971 6677161

Neighbor

gene id symbol gene type direction distance location
LOC117595670 LOC108266894,LOC108266899,LOC108266212,LOC108266890,LOC108266896,LOC108262141,LOC108266891,LOC108266892,LOC108266893,LOC108266242 coding downstream 10958 6613535 ~ 6618013 (-)
LOC117597446 LOC108266891,LOC108266893,LOC108266892,LOC108266212,LOC108266242,LOC108262141,LOC108266890,LOC108266899,LOC108266894 coding downstream 22827 6593174 ~ 6606144 (-)
LOC113534868 LOC108266892,LOC108266891,LOC108266893,LOC108266242,LOC108266896,LOC108266899,LOC108266894,LOC108266212,LOC108266890 coding downstream 32283 6593534 ~ 6596688 (-)
LOC113534869 LOC108266892,LOC108262141,LOC108266212,LOC108266891,LOC108266894,LOC108266899,LOC108266890,LOC108266896,LOC108266893 coding downstream 61932 6563913 ~ 6567039 (-)
LOC113534867 LOC108262141,LOC108266899,LOC108266212,LOC108266892,LOC108266894,LOC108266896,LOC108266891,LOC108266893,LOC108266890,LOC108266242 coding downstream 96331 6528585 ~ 6532640 (-)
LOC117597447 rnf17 coding upstream 31090 6708251 ~ 6715332 (-)
uggt2 uggt2,LOC108266228,LOC108430493,LOC107600415,LOC107663813,LOC107655477 coding upstream 51780 6728941 ~ 6769727 (-)
LOC113535281 oxgr1 coding upstream 166445 6843606 ~ 6845500 (-)
si:ch73-116o1.2 LOC108266255,LOC108430494,LOC107551943,LOC107600440,LOC107663912,LOC107733654 coding upstream 280685 6957846 ~ 6971100 (-)
LOC113535005 LOC108266250,LOC108266249,LOC108266251 coding upstream 548843 7226004 ~ 7230646 (-)
LOC117597449 NA non-coding downstream 92700 6533450 ~ 6536271 (-)
G77840 NA non-coding downstream 300886 6326099 ~ 6328085 (-)
G77799 NA non-coding downstream 338960 6289797 ~ 6290011 (-)
G77797 NA non-coding downstream 347547 6280999 ~ 6281424 (-)
LOC117597312 NA non-coding downstream 373821 6253870 ~ 6255150 (-)
G78172 NA non-coding upstream 400260 7077421 ~ 7107392 (-)
G78203 NA non-coding upstream 508272 7185433 ~ 7185732 (-)
G78242 LOC108266891,LOC108266212,LOC108266211,LOC108266899,LOC108266892,LOC108266894,LOC108266242,LOC108266919,LOC108266890,LOC108266893 non-coding upstream 599658 7276819 ~ 7292595 (-)
G78255 LOC108266894,LOC108266212,LOC108262141,LOC108266891,LOC108266892,LOC108266899,LOC108266893,LOC108266896,LOC108266242 non-coding upstream 637536 7314697 ~ 7340303 (-)
G78259 NA non-coding upstream 665345 7342506 ~ 7343664 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other downstream 13311 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other downstream 83018 6542433 ~ 6545953 (-)
LOC117597343 NA other downstream 304291 6323043 ~ 6324680 (-)
LOC117597406 LOC108266244 other downstream 375625 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 1289338 5331584 ~ 5339633 (-)
G78159 NA other upstream 366626 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 771887 7449048 ~ 7451561 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other upstream 867345 7544506 ~ 7549631 (-)
G78626 LOC108266388 other upstream 1067565 7744726 ~ 7747638 (-)
G79221 NA other upstream 1987529 8664690 ~ 8665579 (-)

Expression


Co-expression Network