LOC117597312


Basic Information

Item Value
gene id LOC117597312
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6253870 ~ 6255150 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578155.1
CTGAGCTGCACAGAAcagcagacagagaaagacacacaggCGAGGATGAGAATTTCACTCACACCTTCACACAAGTATAGATTCAAACATGGGATCCTCTCCATCCAAACCTGAATTTGTGACAGTTCTGGCTGAAAAACATGTTAAAAGTGGAGATCATGTTATTCTTCAATGTCAGGCAAACACAGAAGATGTAACAACAGCATGGGAAAAGGACGGCCACAATTTGTCATGTGTAGAGGGCAAGCacactgtgaaaaaaattgGTACAACATGTGTCTTGGAAATTTCAAATGCTCAGGAGAGTGATGAAGGGAATTATACCATAACCCTGAGTAACAGAAAAGGCTCCGTCTCATGCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578155.1 True 364 lncRNA 0.42 3 6253870 6255150

Neighbor

gene id symbol gene type direction distance location
LOC113534858 LOC108266244 coding downstream 10158 6225854 ~ 6243712 (-)
LOC117597339 NA coding downstream 22678 6228208 ~ 6231192 (-)
arhgap15 arhgap15 coding downstream 771895 5440481 ~ 5481975 (-)
acvr2aa LOC108266626,LOC108412453,LOC107709421,LOC107673126 coding downstream 1095048 5115388 ~ 5158822 (-)
epc2 epc2 coding downstream 1150348 5091309 ~ 5103522 (-)
mcf2lb LOC108266232,LOC108430488 coding upstream 153011 6408161 ~ 6431124 (-)
LOC113534875 rnf17 coding upstream 196214 6451364 ~ 6708475 (-)
LOC113534871 LOC108262141,LOC108266212,LOC108266893,LOC108266891,LOC108266894,LOC108266892,LOC108266896,LOC108266899,LOC108266890 coding upstream 227195 6482345 ~ 6485575 (-)
LOC113534866 LOC108266891,LOC108266212,LOC108266892,LOC108266896,LOC108266890,LOC108262141,LOC108266893,LOC108266899,LOC108266894 coding upstream 248679 6503829 ~ 6506790 (-)
LOC113534867 LOC108262141,LOC108266899,LOC108266212,LOC108266892,LOC108266894,LOC108266896,LOC108266891,LOC108266893,LOC108266890,LOC108266242 coding upstream 273435 6528585 ~ 6532640 (-)
G77763 NA non-coding downstream 51097 6202569 ~ 6202773 (-)
G77719 NA non-coding downstream 134732 6118931 ~ 6119138 (-)
G77645 efnb2 non-coding downstream 680486 5569857 ~ 5573384 (-)
G77629 NA non-coding downstream 705705 5493317 ~ 5548165 (-)
G77540 NA non-coding downstream 839094 5414341 ~ 5414776 (-)
G77797 NA non-coding upstream 25849 6280999 ~ 6281424 (-)
G77799 NA non-coding upstream 34647 6289797 ~ 6290011 (-)
G77840 NA non-coding upstream 70949 6326099 ~ 6328085 (-)
LOC117597449 NA non-coding upstream 278300 6533450 ~ 6536271 (-)
G78172 NA non-coding upstream 822271 7077421 ~ 7107392 (-)
LOC117597406 LOC108266244 other downstream 524 6238955 ~ 6253346 (-)
LOC113534947 NA other downstream 914237 5331584 ~ 5339633 (-)
G77283 NA other downstream 1408991 4839960 ~ 4844879 (-)
faima faima,LOC108266416,LOC108425966,LOC102793570,LOC107723686,LOC107567769,LOC101481285 other downstream 2437811 3786956 ~ 3816059 (-)
LOC113541352 c6h21orf62 other downstream 3448007 2801006 ~ 2805863 (-)
LOC117597343 NA other upstream 67893 6323043 ~ 6324680 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other upstream 273896 6529046 ~ 6615660 (-)
LOC113534870 LOC108266896,LOC108266892,LOC108266899,LOC108266891,LOC108266212,LOC108266894,LOC108266242,LOC108266893,LOC108266890,LOC108262141 other upstream 287283 6542433 ~ 6545953 (-)
G78159 NA other upstream 788637 7043787 ~ 7046809 (-)
LOC117597373 NA other upstream 1193898 7449048 ~ 7451561 (-)

Expression


Co-expression Network