LOC113524353


Basic Information

Item Value
gene id LOC113524353
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 660906 ~ 662091 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578165.1
CTTCCATTCCCTTACTTTGGTAAGATGGGAAAGACCATCAAAATTTGCCAAACACATTGAGCACATGAATGGGAGAGAAGTCTGGAGAAAATCAACCTGAAGAATATCAACCATGTTGCAGGAGGAATAAAAAGTTTTAGGTCAAGAAGATTGATGAGTTTCGTTGTCTGATTGAGACACATTAAATCTTCGGTCTGTTGTCTTCTCTGAAACTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578165.1 True 216 lncRNA 0.38 3 660906 662091

Neighbor

gene id symbol gene type direction distance location
fancb fancb coding downstream 159699 490480 ~ 501207 (-)
gpm6bb gpm6b,LOC108414227,LOC105898107,LOC103023481,LOC100694635 coding downstream 202223 433287 ~ 458683 (-)
trappc2 trappc2 coding downstream 244848 412573 ~ 416058 (-)
LOC113524317 LOC108273544 coding downstream 306301 322246 ~ 354605 (-)
edar edar coding downstream 403460 232575 ~ 257446 (-)
arsh LOC108266883 coding upstream 13428 675519 ~ 685478 (-)
LOC113524316 LOC108272333 coding upstream 58536 720627 ~ 724412 (-)
tlr7 tlr7,LOC108266215 coding upstream 63420 725511 ~ 729048 (-)
dct dct coding upstream 165190 827281 ~ 833892 (-)
LOC113524324 LOC108266872,LOC108260750 coding upstream 282228 944319 ~ 957738 (-)
LOC117597328 NA non-coding downstream 187 653153 ~ 660719 (-)
G75240 NA non-coding downstream 98943 561353 ~ 561963 (-)
G75201 NA non-coding downstream 178942 481068 ~ 481964 (-)
G75195 NA non-coding downstream 226070 431519 ~ 434836 (-)
G75183 NA non-coding downstream 243159 416737 ~ 417747 (-)
G75356 NA non-coding upstream 57414 719505 ~ 720606 (-)
G75365 NA non-coding upstream 98261 760352 ~ 760838 (-)
G75369 NA non-coding upstream 102204 764295 ~ 764555 (-)
G75372 NA non-coding upstream 105270 767361 ~ 772430 (-)
G75348 NA non-coding upstream 134731 796822 ~ 892057 (-)
LOC113524348 LOC108266920 other downstream 286262 372567 ~ 374644 (-)
LOC113524562 LOC108270747,LOC108273219,LOC108273545,LOC108261257,LOC108274210,LOC108270753 other downstream 330416 323463 ~ 330490 (-)
nms pdcl3,nms other downstream 459894 195031 ~ 201012 (-)
G75076 NA other downstream 498329 162214 ~ 162577 (-)
G74824 LOC108263794,LOC108263798 other downstream 616560 43731 ~ 44346 (-)
tmsb4x NA other upstream 28989 691080 ~ 719115 (-)
frmpd4 frmpd4 other upstream 67501 729592 ~ 765991 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other upstream 196313 858404 ~ 864607 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other upstream 257805 919896 ~ 936968 (-)
LOC113524372 NA other upstream 275921 938012 ~ 938203 (-)

Expression


Co-expression Network