trnal-caa_1


Basic Information

Item Value
gene id trnal-caa_1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1258142 ~ 1258256 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnal-caa_1
GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCCGGGTGGAGgcgtgggttcgaatcccacttctgaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-caa_1 True 84 tRNA 0.57 2 1258142 1258256

Neighbor

gene id symbol gene type direction distance location
trnaw-cca NA coding downstream 5148 1252923 ~ 1252994 (-)
trnal-cag_10 NA coding downstream 27473 1230587 ~ 1230669 (-)
trnas-uga_4 NA coding downstream 27752 1230309 ~ 1230390 (-)
LOC113524329 NA coding downstream 145591 1103040 ~ 1112551 (-)
LOC113524324 LOC108266872,LOC108260750 coding downstream 300404 944319 ~ 957738 (-)
ints6 ints6,LOC107567782,LOC107695579,LOC107725253,LOC107685346 coding upstream 13151 1271407 ~ 1282002 (-)
trnan-guu_14 NA coding upstream 28797 1287053 ~ 1287127 (-)
trnat-agu_1 NA coding upstream 31471 1289727 ~ 1289800 (-)
trnan-guu_15 NA coding upstream 33330 1291586 ~ 1291660 (-)
trnat-agu_2 NA coding upstream 35615 1293871 ~ 1293944 (-)
G75663 NA non-coding downstream 4046 1237221 ~ 1254096 (-)
G75636 NA non-coding downstream 42438 1209385 ~ 1215704 (-)
G75640 NA non-coding downstream 88449 1169459 ~ 1169693 (-)
G75628 NA non-coding downstream 117939 1135626 ~ 1140203 (-)
G75600 NA non-coding downstream 176736 1081207 ~ 1081406 (-)
G75687 NA non-coding upstream 47733 1305989 ~ 1306353 (-)
G75713 NA non-coding upstream 108126 1366382 ~ 1367066 (-)
G75719 NA non-coding upstream 117130 1375386 ~ 1377189 (-)
G75727 NA non-coding upstream 126602 1384858 ~ 1385522 (-)
G75732 NA non-coding upstream 134523 1392779 ~ 1395138 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 70643 1170709 ~ 1187499 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 98804 1145297 ~ 1159338 (-)
LOC113524372 NA other downstream 319939 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 321174 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 393535 858404 ~ 864607 (-)
trnat-agu_4 NA other upstream 189935 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 213233 1471489 ~ 1471561 (-)
G75770 NA other upstream 270814 1529070 ~ 1529513 (-)
htr2aa NA other upstream 333699 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 380129 1638385 ~ 1638458 (-)

Expression


Co-expression Network