trnal-caa_2


Basic Information

Item Value
gene id trnal-caa_2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1314314 ~ 1314426 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnal-caa_2
GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCCGAATGGAGgcgtgggttcgaatcccacttCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-caa_2 True 84 tRNA 0.58 2 1314314 1314426

Neighbor

gene id symbol gene type direction distance location
trnan-guu_16 NA coding downstream 18544 1295696 ~ 1295770 (-)
trnat-agu_2 NA coding downstream 20370 1293871 ~ 1293944 (-)
trnan-guu_15 NA coding downstream 22654 1291586 ~ 1291660 (-)
trnat-agu_1 NA coding downstream 24514 1289727 ~ 1289800 (-)
trnan-guu_14 NA coding downstream 27187 1287053 ~ 1287127 (-)
rubcnl rubcnl coding upstream 5837 1320263 ~ 1339222 (-)
esd esd,LOC107675365,LOC107601075,LOC107709410 coding upstream 82258 1396684 ~ 1404791 (-)
trnaw-cca_4 NA coding upstream 100242 1414668 ~ 1414739 (-)
si:dkey-230p4.1 LOC108271988 coding upstream 215399 1529825 ~ 1552435 (-)
LOC113524666 LOC108271633 coding upstream 240516 1554942 ~ 1566787 (-)
G75687 NA non-coding downstream 7961 1305989 ~ 1306353 (-)
G75663 NA non-coding downstream 60218 1237221 ~ 1254096 (-)
G75636 NA non-coding downstream 98610 1209385 ~ 1215704 (-)
G75640 NA non-coding downstream 144621 1169459 ~ 1169693 (-)
G75628 NA non-coding downstream 174111 1135626 ~ 1140203 (-)
G75713 NA non-coding upstream 51956 1366382 ~ 1367066 (-)
G75719 NA non-coding upstream 60960 1375386 ~ 1377189 (-)
G75727 NA non-coding upstream 70432 1384858 ~ 1385522 (-)
G75732 NA non-coding upstream 78353 1392779 ~ 1395138 (-)
G75734 NA non-coding upstream 81871 1396297 ~ 1396522 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 126815 1170709 ~ 1187499 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 154976 1145297 ~ 1159338 (-)
LOC113524372 NA other downstream 376111 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 377346 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 449707 858404 ~ 864607 (-)
trnat-agu_4 NA other upstream 133765 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 157063 1471489 ~ 1471561 (-)
G75770 NA other upstream 214644 1529070 ~ 1529513 (-)
htr2aa NA other upstream 277529 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 323959 1638385 ~ 1638458 (-)

Expression


Co-expression Network