trnal-caa_7


Basic Information

Item Value
gene id trnal-caa_7
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1568745 ~ 1568857 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnal-caa_7
GTCAGGATGGCCGAGCGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTCCGAATGGAGgcgtgggttcgaatcccacttCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-caa_7 True 84 tRNA 0.58 2 1568745 1568857

Neighbor

gene id symbol gene type direction distance location
LOC113524666 LOC108271633 coding downstream 1958 1554942 ~ 1566787 (-)
si:dkey-230p4.1 LOC108271988 coding downstream 16310 1529825 ~ 1552435 (-)
trnaw-cca_4 NA coding downstream 154006 1414668 ~ 1414739 (-)
esd esd,LOC107675365,LOC107601075,LOC107709410 coding downstream 163954 1396684 ~ 1404791 (-)
rubcnl rubcnl coding downstream 229523 1320263 ~ 1339222 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027 coding upstream 47043 1615900 ~ 1624049 (-)
mlphb LOC108261129 coding upstream 154400 1723257 ~ 1747031 (-)
cops8 cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920 coding upstream 289405 1858262 ~ 1871493 (-)
trim63b trim63b,LOC100194566,LOC100505419 coding upstream 293296 1862153 ~ 1863790 (-)
ranbp2 LOC108261082,LOC108440489 coding upstream 381275 1950132 ~ 1986039 (-)
G75740 NA non-coding downstream 100846 1467662 ~ 1467899 (-)
G75739 NA non-coding downstream 113458 1454999 ~ 1455287 (-)
G75737 NA non-coding downstream 135518 1433022 ~ 1433227 (-)
G75736 NA non-coding downstream 154568 1413842 ~ 1414177 (-)
G75734 NA non-coding downstream 172223 1396297 ~ 1396522 (-)
G75814 NA non-coding upstream 87516 1656373 ~ 1656848 (-)
G75875 NA non-coding upstream 153724 1722581 ~ 1722799 (-)
G75889 col6a3,LOC108262369 non-coding upstream 232415 1801272 ~ 1819183 (-)
G75880 NA non-coding upstream 280380 1849237 ~ 1873669 (-)
G75925 NA non-coding upstream 342339 1911196 ~ 1917438 (-)
G75770 NA other downstream 39232 1529070 ~ 1529513 (-)
trnak-uuu_2 NA other downstream 97184 1471489 ~ 1471561 (-)
trnat-agu_4 NA other downstream 120481 1448191 ~ 1448264 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 381246 1170709 ~ 1187499 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 409407 1145297 ~ 1159338 (-)
htr2aa NA other upstream 23098 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 69528 1638385 ~ 1638458 (-)
trnar-ucu_5 NA other upstream 69906 1638763 ~ 1638852 (-)
trnat-agu_7 NA other upstream 81196 1650053 ~ 1650126 (-)
trnar-ucu_6 NA other upstream 93663 1662520 ~ 1662609 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnal-caa-107 NA coding NC_048586.1 CM023240.2 30580006 ~ 30580114 (+)
eurasian perch (Perca fluviatilis) trnal-caa_11 NA coding NC_053123.1 CM020920.1 24866728 ~ 24866838 (-)
tiger barb (Puntius tetrazona) trnas-aga_69 NA coding NC_056702.1 CM032071.1 26152705 ~ 26152786 (+)
mexican tetra (Astyanax mexicanus) trnal-caa_24 NA coding NW_019171641.1 APWO02001239.1 103637 ~ 103746 (-)