trnas-uga_4


Basic Information

Item Value
gene id trnas-uga_4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1230309 ~ 1230390 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-uga_4
GTAGTCGTGGCCGAGTGGTTAAGGCGATGGACTTGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-uga_4 True 82 tRNA 0.59 1 1230309 1230390

Neighbor

gene id symbol gene type direction distance location
LOC113524329 NA coding downstream 117758 1103040 ~ 1112551 (-)
LOC113524324 LOC108266872,LOC108260750 coding downstream 272571 944319 ~ 957738 (-)
dct dct coding downstream 396417 827281 ~ 833892 (-)
tlr7 tlr7,LOC108266215 coding downstream 501261 725511 ~ 729048 (-)
LOC113524316 LOC108272333 coding downstream 505897 720627 ~ 724412 (-)
trnal-cag_10 NA coding upstream 197 1230587 ~ 1230669 (-)
trnaw-cca NA coding upstream 22533 1252923 ~ 1252994 (-)
trnal-caa_1 NA coding upstream 27752 1258142 ~ 1258256 (-)
ints6 ints6,LOC107567782,LOC107695579,LOC107725253,LOC107685346 coding upstream 41017 1271407 ~ 1282002 (-)
trnan-guu_14 NA coding upstream 56663 1287053 ~ 1287127 (-)
G75636 NA non-coding downstream 14605 1209385 ~ 1215704 (-)
G75640 NA non-coding downstream 60616 1169459 ~ 1169693 (-)
G75628 NA non-coding downstream 90106 1135626 ~ 1140203 (-)
G75600 NA non-coding downstream 148903 1081207 ~ 1081406 (-)
G75599 NA non-coding downstream 149954 1079923 ~ 1080355 (-)
G75663 NA non-coding upstream 6831 1237221 ~ 1254096 (-)
G75687 NA non-coding upstream 75599 1305989 ~ 1306353 (-)
G75713 NA non-coding upstream 135992 1366382 ~ 1367066 (-)
G75719 NA non-coding upstream 144996 1375386 ~ 1377189 (-)
G75727 NA non-coding upstream 154468 1384858 ~ 1385522 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 42810 1170709 ~ 1187499 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 70971 1145297 ~ 1159338 (-)
LOC113524372 NA other downstream 292106 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 293341 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 365702 858404 ~ 864607 (-)
trnat-agu_4 NA other upstream 217801 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 241099 1471489 ~ 1471561 (-)
G75770 NA other upstream 298680 1529070 ~ 1529513 (-)
htr2aa NA other upstream 361565 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 407995 1638385 ~ 1638458 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) trnas-uga_1 NA misc NC_047598.1 CM018544.1 28236186 ~ 28236267 (-)
mexican tetra (Astyanax mexicanus) trnas-uga_1 NA misc NC_035899.1 CM008302.1 53641661 ~ 53641742 (+)