trnat-agu_1


Basic Information

Item Value
gene id trnat-agu_1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1289727 ~ 1289800 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnat-agu_1
GGCGCTGTGGCTTAGTTGGTTAAAGTGCCTGTCTAGTAAACAGGAGATCctgggttcgaatcccagcaGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-agu_1 True 74 tRNA 0.57 1 1289727 1289800

Neighbor

gene id symbol gene type direction distance location
trnan-guu_14 NA coding downstream 2600 1287053 ~ 1287127 (-)
ints6 ints6,LOC107567782,LOC107695579,LOC107725253,LOC107685346 coding downstream 7725 1271407 ~ 1282002 (-)
trnal-caa_1 NA coding downstream 31471 1258142 ~ 1258256 (-)
trnaw-cca NA coding downstream 36733 1252923 ~ 1252994 (-)
trnal-cag_10 NA coding downstream 59058 1230587 ~ 1230669 (-)
trnan-guu_15 NA coding upstream 1786 1291586 ~ 1291660 (-)
trnat-agu_2 NA coding upstream 4071 1293871 ~ 1293944 (-)
trnan-guu_16 NA coding upstream 5896 1295696 ~ 1295770 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC106511784 coding upstream 17154 1306954 ~ 1315333 (-)
trnal-caa_2 NA coding upstream 24514 1314314 ~ 1314426 (-)
G75663 NA non-coding downstream 35631 1237221 ~ 1254096 (-)
G75636 NA non-coding downstream 74023 1209385 ~ 1215704 (-)
G75640 NA non-coding downstream 120034 1169459 ~ 1169693 (-)
G75628 NA non-coding downstream 149524 1135626 ~ 1140203 (-)
G75600 NA non-coding downstream 208321 1081207 ~ 1081406 (-)
G75687 NA non-coding upstream 16189 1305989 ~ 1306353 (-)
G75713 NA non-coding upstream 76582 1366382 ~ 1367066 (-)
G75719 NA non-coding upstream 85586 1375386 ~ 1377189 (-)
G75727 NA non-coding upstream 95058 1384858 ~ 1385522 (-)
G75732 NA non-coding upstream 102979 1392779 ~ 1395138 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 102228 1170709 ~ 1187499 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 130389 1145297 ~ 1159338 (-)
LOC113524372 NA other downstream 351524 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 352759 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 425120 858404 ~ 864607 (-)
trnat-agu_4 NA other upstream 158391 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 181689 1471489 ~ 1471561 (-)
G75770 NA other upstream 239270 1529070 ~ 1529513 (-)
htr2aa NA other upstream 302155 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 348585 1638385 ~ 1638458 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnat-agu NA coding NC_053113.1 CM020910.1 27346198 ~ 27346271 (+)
tiger barb (Puntius tetrazona) trnar-ucg_64 NA coding NC_056699.1 CM032068.1 13288210 ~ 13288282 (-)