trnat-agu_6


Basic Information

Item Value
gene id trnat-agu_6
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1638385 ~ 1638458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnat-agu_6
GGCGCTGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATCctgggttcgaatcccagcaGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-agu_6 True 74 tRNA 0.54 1 1638385 1638458

Neighbor

gene id symbol gene type direction distance location
med4 med4,LOC107673119,LOC107709409,LOC107724027 coding downstream 14336 1615900 ~ 1624049 (-)
trnal-caa_7 NA coding downstream 69528 1568745 ~ 1568857 (-)
LOC113524666 LOC108271633 coding downstream 71598 1554942 ~ 1566787 (-)
si:dkey-230p4.1 LOC108271988 coding downstream 85950 1529825 ~ 1552435 (-)
trnaw-cca_4 NA coding downstream 223646 1414668 ~ 1414739 (-)
mlphb LOC108261129 coding upstream 84799 1723257 ~ 1747031 (-)
cops8 cops8,LOC106581673,LOC107725246,LOC107723689,LOC107685920 coding upstream 219804 1858262 ~ 1871493 (-)
trim63b trim63b,LOC100194566,LOC100505419 coding upstream 223695 1862153 ~ 1863790 (-)
ranbp2 LOC108261082,LOC108440489 coding upstream 311674 1950132 ~ 1986039 (-)
lims2 LOC108261084,LOC108440488,LOC105898085 coding upstream 350082 1988540 ~ 1998073 (-)
G75740 NA non-coding downstream 170486 1467662 ~ 1467899 (-)
G75739 NA non-coding downstream 183098 1454999 ~ 1455287 (-)
G75737 NA non-coding downstream 205158 1433022 ~ 1433227 (-)
G75736 NA non-coding downstream 224208 1413842 ~ 1414177 (-)
G75734 NA non-coding downstream 241863 1396297 ~ 1396522 (-)
G75814 NA non-coding upstream 17915 1656373 ~ 1656848 (-)
G75875 NA non-coding upstream 84123 1722581 ~ 1722799 (-)
G75889 col6a3,LOC108262369 non-coding upstream 162814 1801272 ~ 1819183 (-)
G75880 NA non-coding upstream 210779 1849237 ~ 1873669 (-)
G75925 NA non-coding upstream 272738 1911196 ~ 1917438 (-)
htr2aa NA other downstream 41906 1591955 ~ 1596479 (-)
G75770 NA other downstream 108872 1529070 ~ 1529513 (-)
trnak-uuu_2 NA other downstream 166824 1471489 ~ 1471561 (-)
trnat-agu_4 NA other downstream 190121 1448191 ~ 1448264 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 450886 1170709 ~ 1187499 (-)
trnar-ucu_5 NA other upstream 305 1638763 ~ 1638852 (-)
trnat-agu_7 NA other upstream 11595 1650053 ~ 1650126 (-)
trnar-ucu_6 NA other upstream 24062 1662520 ~ 1662609 (-)
trnat-agu_8 NA other upstream 35654 1674112 ~ 1674185 (-)
trnar-ucu_7 NA other upstream 36026 1674484 ~ 1674573 (-)

Expression


Co-expression Network