trnaw-cca_4


Basic Information

Item Value
gene id trnaw-cca_4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 1414668 ~ 1414739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaw-cca_4
GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaw-cca_4 True 72 tRNA 0.58 1 1414668 1414739

Neighbor

gene id symbol gene type direction distance location
esd esd,LOC107675365,LOC107601075,LOC107709410 coding downstream 9877 1396684 ~ 1404791 (-)
rubcnl rubcnl coding downstream 75446 1320263 ~ 1339222 (-)
dhrs12 dhrs12,LOC107685263,LOC107723690,LOC106511784 coding downstream 99335 1306954 ~ 1315333 (-)
trnal-caa_2 NA coding downstream 100242 1314314 ~ 1314426 (-)
trnan-guu_16 NA coding downstream 118898 1295696 ~ 1295770 (-)
si:dkey-230p4.1 LOC108271988 coding upstream 115086 1529825 ~ 1552435 (-)
LOC113524666 LOC108271633 coding upstream 140203 1554942 ~ 1566787 (-)
trnal-caa_7 NA coding upstream 154006 1568745 ~ 1568857 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027 coding upstream 201161 1615900 ~ 1624049 (-)
mlphb LOC108261129 coding upstream 308518 1723257 ~ 1747031 (-)
G75736 NA non-coding downstream 491 1413842 ~ 1414177 (-)
G75734 NA non-coding downstream 18146 1396297 ~ 1396522 (-)
G75732 NA non-coding downstream 19530 1392779 ~ 1395138 (-)
G75727 NA non-coding downstream 29146 1384858 ~ 1385522 (-)
G75719 NA non-coding downstream 37479 1375386 ~ 1377189 (-)
G75737 NA non-coding upstream 18283 1433022 ~ 1433227 (-)
G75739 NA non-coding upstream 40260 1454999 ~ 1455287 (-)
G75740 NA non-coding upstream 52923 1467662 ~ 1467899 (-)
G75814 NA non-coding upstream 241634 1656373 ~ 1656848 (-)
G75875 NA non-coding upstream 307842 1722581 ~ 1722799 (-)
lcp1 lcp1,LOC108439517,LOC107740717,LOC107660271,LOC107732195 other downstream 227169 1170709 ~ 1187499 (-)
rpl31 rpl31,LOC102795706,LOC106575914,LOC107740715 other downstream 255330 1145297 ~ 1159338 (-)
LOC113524372 NA other downstream 476465 938012 ~ 938203 (-)
LOC113524338 LOC108266882,LOC108266876,LOC108266218,LOC108258194 other downstream 477700 919896 ~ 936968 (-)
sox21b LOC108266914,LOC108440504,LOC107722114,LOC107674003,LOC107558380 other downstream 550061 858404 ~ 864607 (-)
trnat-agu_4 NA other upstream 33452 1448191 ~ 1448264 (-)
trnak-uuu_2 NA other upstream 56750 1471489 ~ 1471561 (-)
G75770 NA other upstream 114331 1529070 ~ 1529513 (-)
htr2aa NA other upstream 177216 1591955 ~ 1596479 (-)
trnat-agu_6 NA other upstream 223646 1638385 ~ 1638458 (-)

Expression


Co-expression Network