G100034


Basic Information

Item Value
gene id G100034
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15546576 ~ 15548763 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118613
TTCAAAGctgatttaaatgtctgttgtgCTTAAATGCCTGAACATTCTGATCATTCCTGATTATACCTACAATTGTAGATCATATGGCTTCACATCAAACTGCCTtttttatcaataaaaaaaccttatttttgacagattttttgtgatttgtcaCTCTTGCTATGAGATGAGATTATTCCACCTTCTCTGTGATGTCTGAGATTCCTCATCTCACACCTCTAACAAACTCTTCTTGCCATAAACaatgatgtaaatgtttaaaagagaCGACGGTAAAATTGTCAAAAGTGGTTAAAAGTAATCATGTAGGAATGCAGCACTGAAGATGCGATTTTATGAATCACAAAAGCATAATCGATTTTGTAAACCTCTAACATGAGTGAATCATCATTTACACGTTCAATTCAAACTTCACGTCTTATTATGTAAATAGTTTTGGCATTTTGTAGCTTCAACTCAAAGTCGTTTGGATGAAAGTGATCGTCCATTGACTAACACTCTGTGCCTTTTGTCCACATTTTAGAGACAGAATGCATTTCCTCTTGTATGGCTATAAAGGTCattttacatgttaaaaaaaaaaccgtcAAAGCATTGTGTTTTCTCATCAATAGGTTTCAGACATGCAGCCACACATGCCCACACATTCAGTGTTAATTTCGCATGAGGGTAATATACCACAGACAGATGTATATCTAAATAAGAGAACAGCAGAGAATAGAGCATCTGACCACACTACTGGTTTCCTGCAACAATCTACGACATCTTTTGAATGCAAGAAGAACTGACATTTTTCATCAGgtattttgtcaaaaaaaatagcagcagggttttatttggcttttttgtttgtttgtttgtttgttttacgaAGAGTGGAGATGAACAGAGGAAGATTCTCGTTGTAATGAGCAGGCGAGCGTGCAGTTGGGGCGTTGCCGGGACTGCGGGGAATATTCTGGCACCAAGACCCTTTACTCAATACACCGACTGCTCTCCCTCCACTACTTAagcaaacacaccacacacagacacacacagagacatacagagacacacacagcaccaaaTCAAAATCACATCAAACACAAAGgatcaccatggcaacacatGCCATACTGTGTGTTGCTGCTCAGGGGACGACTGACACATAcgcacatgaacacacacacacacacacacacacacacaaaccagtgATGCATAATGCATTGGCGGCTTTCATTCCTTTCTCAAAAAGCTCATGCTGGTAActgagcaagaaaaaaaaaaatcagtatctATAACTGCACTATTTCCATGTCCTTCACTGCCATATCTatcaaaaacaaactaaaaagcTCACTCTCCATCAGGGAGGCTCTTCCTCCCACAtactttaggaaaaaaaaaaaagtctgcttgGAAAAATTTCTAGGCTATTATCTATTTGGTTAAATCATGACATTTAAGCATGTTGGAATACATGATACCCAGCCTGTGCTAATTGCCTGAGTATAACCAATTACAGAACTGTGCTGTAATTTCGATTACTGGAACATAACTTCATCCCCGGGTTGGATAAAATGCTAGGCCAGGCACATCAAACAAGCAGATTACGTATTTGGGCTTCAGTCTTTCATTAACAGTTACTTGGCAGACAAGCAGATTCTCTACcttttttaacttcattcatctaCCAACAATGGAAAGAAAAACTCTTCTTCCTATTGACTGTGGCAAAAGAAAACGTTTCCTAACATGCCCCAAATGGTTCATATATTCCTCAGTGCTGTTAAGCACCTCGATGGTTTGGCATGTGTGACTCTCTTCTGCTATCTTGTGCGTTACACATGTGCCTGGCTGTTGGCAGtagcaaaaaatgaaaatgcctATCAGAATGCGATAATGTCTTACGTGCGACGAGAGAACACCGCAGCTCATAGCCGAAATGGTAGCCAAagactttctgtctttttgtcatCGCTGCTTCATCACCAGTGACATTATCAGGAGAGGATAAAGACAATAGCTACATAAAGTTACCCATCCCATGGATTCAAGACTTGCTTGTATTCATTCCATGTATTCATGAACATAATTAGCTCATCCGACTTTTgagtaaaattattttagttGCCGTTAATTGGACTTCCAGGCACTGAAGCTTTCActtgcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118613 True 2162 lncRNA 0.39 2 15546576 15548763

Neighbor

gene id symbol gene type direction distance location
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 47324 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 73561 15471629 ~ 15473015 (-)
pard6a pard6a,LOC107692936 coding downstream 346328 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 414370 15121047 ~ 15132206 (-)
nutf2 nutf2 coding downstream 426858 15105315 ~ 15119718 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding upstream 526184 16074947 ~ 16083613 (-)
LOC113534689 NA coding upstream 1032599 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 1132159 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 1390128 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 1539878 17088641 ~ 17307902 (-)
G100028 NA non-coding downstream 62275 15484003 ~ 15484301 (-)
G100027 NA non-coding downstream 63539 15482829 ~ 15483037 (-)
G100023 NA non-coding downstream 68410 15477501 ~ 15478166 (-)
LOC113534479 NA non-coding downstream 109660 15433395 ~ 15436916 (-)
G99941 NA non-coding downstream 228709 15317509 ~ 15317867 (-)
G100007 NA non-coding upstream 54496 15603259 ~ 15603536 (-)
G100072 NA non-coding upstream 104623 15653386 ~ 15655787 (-)
LOC113534668 NA non-coding upstream 141518 15690281 ~ 15726357 (-)
G100154 NA non-coding upstream 314817 15863580 ~ 15863779 (-)
G100179 NA non-coding upstream 390360 15939123 ~ 15939329 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 189013 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 1199568 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1984002 13550680 ~ 13562574 (-)
G98770 NA other downstream 2494265 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 3122598 12420437 ~ 12423978 (-)
G101178 NA other upstream 2638684 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4431306 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 4847103 20395866 ~ 20416574 (-)
G102566 NA other upstream 5404839 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 5446578 20995341 ~ 21013100 (-)

Expression


Co-expression Network