G100727


Basic Information

Item Value
gene id G100727
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17407090 ~ 17407386 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119386
ggacatttacacctcacgctgcatccgcaaagccaccagcattgtcgatgaccccacacacccctctcacacactctttaccctcctgctgtctggtaaacggtaccgaagcattggggacctcacgaccagactgtgcaatagtttcttcccccatgccattagactcctcaatactcagaaactggactgacacactcatacatatatacacacaactgagcatcctccatcctctctgcaatttttttgcaagtttttgcacaggTTTATGCTGCTACTATACTTATTATAcgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119386 True 297 lncRNA 0.47 1 17407090 17407386

Neighbor

gene id symbol gene type direction distance location
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 99188 17088641 ~ 17307902 (-)
LOC117597525 NA coding downstream 462660 16938891 ~ 16944430 (-)
chd2 chd2,LOC107690375,LOC107715217 coding downstream 666019 16680922 ~ 16741071 (-)
LOC113534689 NA coding downstream 796780 16581362 ~ 16610310 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 1323477 16074947 ~ 16083613 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 14975 17422361 ~ 17478285 (-)
LOC117597582 NA coding upstream 313159 17720545 ~ 17725320 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding upstream 875233 18282619 ~ 18524226 (-)
znf710a znf710 coding upstream 1327041 18734427 ~ 18741724 (-)
dhx34 dhx34 coding upstream 1902502 19309888 ~ 19333430 (-)
LOC113539580 NA non-coding downstream 52329 17345629 ~ 17354761 (-)
G100663 NA non-coding downstream 142681 17249178 ~ 17264409 (-)
G100648 NA non-coding downstream 217657 17188158 ~ 17189433 (-)
G100629 NA non-coding downstream 255912 17150897 ~ 17151178 (-)
G100604 NA non-coding downstream 291756 17115115 ~ 17115334 (-)
G100735 NA non-coding upstream 48666 17456052 ~ 17457045 (-)
G100739 NA non-coding upstream 86026 17493412 ~ 17493623 (-)
G100748 NA non-coding upstream 135755 17543141 ~ 17543353 (-)
G100764 kti12,LOC107562123 non-coding upstream 191103 17598489 ~ 17602770 (-)
G100765 NA non-coding upstream 195843 17603229 ~ 17603658 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 2049527 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 3060082 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 3844516 13550680 ~ 13562574 (-)
G98770 NA other downstream 4354779 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 4983112 12420437 ~ 12423978 (-)
G101178 NA other upstream 780061 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 2572683 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 2988480 20395866 ~ 20416574 (-)
G102566 NA other upstream 3546216 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 3587955 20995341 ~ 21013100 (-)

Expression


Co-expression Network