G100735


Basic Information

Item Value
gene id G100735
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17456052 ~ 17457045 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119395
GCTGAGATGGGATTTAAACAAAAACGTTTTGGGGTCCCTTAGGACAAGGTCATTTACTCAACATCTAGGTTTGGTCAAAAATCCTTCACACCATTCTGGGCTATCCTTAGCAGGATGAACCAGGCAGACTCAATCTGTGCCTGAGTTCCAAACAccaattggaaggctgttctaTAACTGTGGGACTTTTAAGAAAAAGTTCTGGGCCCTGTTGTAGTCTTTGTTGTTCTatgtaccaacaaagagcctgcaccttttgatcaaaagaggcatggcggatcataaaagacaaaaatttcAGTCAGGTACTGCAGcatgagaccatttagtgctttataggtcatttgtagtatttcataaacaatgtgaaattttaatgggagccagtgcagtgtggataagataggagtGATGTGGTCAAATGTTCTAGTTCTAGTAAGGACACTAACTggtgcattctggactaacaaCATATAAGCCTTCATTTCTTGTTTGGTGACTTCACCATCAAATTTCCTATGTGCCTTATGGACGAACTGCCCAGTATATCAAAAATATGATAAACAAACTTTGTTCGGGTCTCCTAATGCTGTAGTCCAAATTTCATGGttattggacaaaTTTTGTGAGAGCTTAAACgaaaaaactgttttgaaaAAATTCTAAATGGCAGAAAATTTAATATGGCAGGAAAGTGGAATCGCATTTCTATGACATTCTGTTGCAGAGTAATTAATGTAAACGTGTGTCCAAATTTGCCCTGTTGGTGGCACTAGTTGGCTTGAATGGCATACACCAAAACTGCTGTGAAGATAGCAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119395 True 821 lncRNA 0.39 2 17456052 17457045

Neighbor

gene id symbol gene type direction distance location
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 148150 17088641 ~ 17307902 (-)
LOC117597525 NA coding downstream 511622 16938891 ~ 16944430 (-)
chd2 chd2,LOC107690375,LOC107715217 coding downstream 714981 16680922 ~ 16741071 (-)
LOC113534689 NA coding downstream 845742 16581362 ~ 16610310 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 1372439 16074947 ~ 16083613 (-)
LOC117597582 NA coding upstream 263500 17720545 ~ 17725320 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding upstream 825574 18282619 ~ 18524226 (-)
znf710a znf710 coding upstream 1277382 18734427 ~ 18741724 (-)
dhx34 dhx34 coding upstream 1852843 19309888 ~ 19333430 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 1950005 19407050 ~ 19496993 (-)
G100727 NA non-coding downstream 48666 17407090 ~ 17407386 (-)
LOC113539580 NA non-coding downstream 101291 17345629 ~ 17354761 (-)
G100663 NA non-coding downstream 191643 17249178 ~ 17264409 (-)
G100648 NA non-coding downstream 266619 17188158 ~ 17189433 (-)
G100629 NA non-coding downstream 304874 17150897 ~ 17151178 (-)
G100739 NA non-coding upstream 36367 17493412 ~ 17493623 (-)
G100748 NA non-coding upstream 86096 17543141 ~ 17543353 (-)
G100764 kti12,LOC107562123 non-coding upstream 141444 17598489 ~ 17602770 (-)
G100765 NA non-coding upstream 146184 17603229 ~ 17603658 (-)
G100771 NA non-coding upstream 260306 17717351 ~ 17718028 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 2098489 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 3109044 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 3893478 13550680 ~ 13562574 (-)
G98770 NA other downstream 4403741 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 5032074 12420437 ~ 12423978 (-)
G101178 NA other upstream 730402 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 2523024 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 2938821 20395866 ~ 20416574 (-)
G102566 NA other upstream 3496557 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 3538296 20995341 ~ 21013100 (-)

Expression


Co-expression Network