G101478


Basic Information

Item Value
gene id G101478
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18650442 ~ 18652261 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120166
gagtgagttgcagtagtccagtcttgaaatgacaagggactgaacaagcacctgtgtggcctgtgtggaatggacgaattcttctgatgttataaaggagaaatcaacatgagcgtgtcagattagcaatgtgagaggagaaggacagttgattgtccatggttaccccaaggttgcatgcagtaaccgaaggcgagatcagagaattgtctagggagattgcaagatcctgagatggggatgaatcacctgggatgaacagcagttcagttttggtgggattaagtttcagctgatgagccgtcatccatgatgagatgtctgccagacatgctgatatccgagcagaaacatgagtgtctgagggagggaaggagaggatgagttgagtgtcatctgcatagcagtggtatgaaaacccatgtgaggatatgaccgcaccaagagatcaagaatagagggagaacaggagtggactaagtactgagccttgtggaacaccagtggagagtctgcagggagcagatgtggatcccctccatgtcacctgatttgaccgaccttccaggtaggaagcaaaccattgccatgctgcatcacgaattcctaggctcatgagggtggacaagagagtcttgtggttcactgtgtcaaacgctactgaaaggtcaaggaggatgaggactgaagacagtttggctgatctagcggcatgtaacttctcagtgacggccaaaggggcagtctctgtggagtgtgccggtttgagGCCAGACttattgggatcttggaggctgtgagagatagcaagacagctgattatagatagttcgttcaagggttttagaaagaaaagagagaagtgataccggtcggtagttgctgatgtcggAGGGATCTATAGTGGGtttcctcagtgtgtagtgtaggagtagaagtgaatgtctggcagatttttccaatcctctcatcataaaaagtggcaatgtcttcagcagtcagggaggatggagcaggaggagctggagggttgagtagtgaagaaaagatgttgtggagcttgcgaggatcttgtgcagaggattccagcttttctttgtagaaggcagtcttagcagaagtcacttcagatgaaaatttggacaggagagcacggtaggagacaagatctgtgtcgagttgcgatttcttccacttcctctcagctgttcttaattctctccgattACTGTGTAACACATCTGATAGCCAAGGGACAGGGCAGGAAATCTTGCTGGGTGTAGAAgatagaggacagaggaggtccaaggatgaggaaagtgaggagatgaaagtgtcagtggctagctccaatggtagggaggaaaaggagtcagggacaggaagggatgatagggtgcaggaagctaaggaggaaggggagatagagtggaggtttttatgagtgggagagaagtatagatggctggtggttttaggcaggatagggagggcgatggtgaaggataccaagagatggtcagagatgtggagagggGTAGCATAGATGTCTGTAGTAGGGAAGGGGCGGCTGAAGACAAGGTCCAGGGTGTTACCTCCTTTATGTGTAGGAGAACAGCTGTTGAAAGTTAAGGAAAAGGAATGGAGAAGAGGTagaaggcaagaggactggagcttgtcagCGGGGAGGTTGAAATCTCCGAGGACAGTAAGAGGGGTGTGAGTAGAGAAAAGACTGAggagcatgtccatttcttcaaggaAGGCCCCAAGGGGACCAGGAGGTCGGTAGATGACAACAATGAGAAGGTTGACTGGAg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120166 True 1820 lncRNA 0.49 1 18650442 18652261

Neighbor

gene id symbol gene type direction distance location
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 126216 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 925122 17720545 ~ 17725320 (-)
alpk3a LOC108264806,LOC104964022 coding downstream 1172157 17422361 ~ 17478285 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 1342540 17088641 ~ 17307902 (-)
LOC117597525 NA coding downstream 1706012 16938891 ~ 16944430 (-)
znf710a znf710 coding upstream 82166 18734427 ~ 18741724 (-)
dhx34 dhx34 coding upstream 657627 19309888 ~ 19333430 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 754789 19407050 ~ 19496993 (-)
LOC113526513 cxcr5 coding upstream 1399071 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 1562881 20215142 ~ 20292323 (-)
G101420 NA non-coding downstream 51075 18598851 ~ 18599367 (-)
G101418 NA non-coding downstream 52752 18597480 ~ 18597690 (-)
G101409 NA non-coding downstream 90828 18559319 ~ 18559614 (-)
G101408 NA non-coding downstream 95249 18554876 ~ 18555193 (-)
G101406 NA non-coding downstream 98239 18551917 ~ 18552203 (-)
G101483 NA non-coding upstream 21203 18673464 ~ 18676017 (-)
G101469 NA non-coding upstream 26470 18678731 ~ 18681725 (-)
G101467 idh2,LOC107714782 non-coding upstream 55657 18707918 ~ 18732829 (-)
G101488 NA non-coding upstream 93884 18746145 ~ 18746365 (-)
G101507 NA non-coding upstream 111089 18763350 ~ 18763597 (-)
G101178 NA other downstream 453636 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 3292879 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 4303434 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 5087868 13550680 ~ 13562574 (-)
G98770 NA other downstream 5598131 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 1327808 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 1743605 20395866 ~ 20416574 (-)
G102566 NA other upstream 2301341 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 2343080 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 3579187 22231448 ~ 22306769 (-)

Expression


Co-expression Network