G101749


Basic Information

Item Value
gene id G101749
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19123917 ~ 19125440 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120450
ATACACATAATAGGAGGCATGCAGGTGAGCTCTGACATCTATACATATGATTGTGCacagccatttaaaaaaaaaaaaaaagctatgagGATGTGTTTCATAGCACAAGAAACACCAACTTGCATTCACAATATGTACCCACCTGTATGAAGGTGTTaagaaaaaatatctaaaattcTTGCTACAGAAATGTCAACAGTTTGATGGTAGCCCCATTTTTACATTAACAGCCCCATTTTACATTAACATACTgtggaaatattttatacatatacatccATTACCACAATGGCAGTCAATCAGTAGTACAGTAGCACACATATCGGATGGCTACTTTTTGCAAAACATATCAAATAAAGTAATTCATAAACATTTAGGAAAAATATTTTGGAATATGTTCAATTGAATTTGTTACTACAATCTGTGGAACAAATGTTTGCATGCTCTTACAAGAGAAATAACATATAAAGTTTGTACATTATATGTTCAAAGTGGTGCAATAGAATGTCCATCTTTGGAAGATTAACAGGTCCCAATGTTCAAGAACCACTTAAATGGCATTTTCAaccatgaaaacattttatgactacaaatatagatttttttgcaTCATCATATGCTACTCTTATGTAGTTCCACTGAGCTGTGTTACAGGTTTTTAAACACACTGCTCTAATCAGTTAAGCAACTGAAGTAACAAGATGAATGTCCAGCCAACTTTGTCTTCCGAAAGGTaaacatgacaaagaaatgCAGTCTAAATAACTCTCTACAAATGTAGCCCACAAGAATGATGATTTTTCCCTTTAAGTTTAAAAGTTGTTCAActgacattttatattatttcaatCCTTTTAAATACAACACCCTTTTGTGGCACATtgcaatacaataaaatattattgatttacatttaaaaaaatttggcACAATGGACTACAGATTTGATTCTTTAAATGGGTATAATATTATTGATACTGGTCACCACCAGTGTTTACATGAACTTCCCCCATTTTTCTATTTCATCCCTAACACTGGTGTGATTGGCATTATCCTTGAAAAGCAAGTCCTCCATCTCTTAGGTccttgaatttttctttttttgccttcATGTCCCATAATGCTCTACCTGTACCATATGCCTTCTTAGGCCCTGTTCACACTTTGTACTAATATAATCTCACTTTACCACATTACCTCTATTCTTACTTTAATACTTGATTGTATGTGTGTTGCTTTGGGAGGCAGTACTGAAGATGTGGCCGTGTGCCAATGCTAGCTTTTCTAAATGGAAATCCAATTCCTGATGAATTCCCAGTGCTTTGCATAGTAGAACTGACTTGTACTGAGGTCATGATGATGTACTCCAGCCTTGCATAgacagttaggtccagaagtatttggacaatgacagagtttttgtgattttgcctttatacacatccacaatggatttgaaataaaacaagcaagatgtgatcgaagtgtagactttctgctttattttaagaggttccacaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120450 True 1524 lncRNA 0.34 1 19123917 19125440

Neighbor

gene id symbol gene type direction distance location
znf710a znf710 coding downstream 382193 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 599691 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 1398597 17720545 ~ 17725320 (-)
alpk3a LOC108264806,LOC104964022 coding downstream 1645632 17422361 ~ 17478285 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 1816015 17088641 ~ 17307902 (-)
dhx34 dhx34 coding upstream 184448 19309888 ~ 19333430 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 281610 19407050 ~ 19496993 (-)
LOC113526513 cxcr5 coding upstream 925892 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 1089702 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 1236890 20362330 ~ 20377332 (-)
G101745 NA non-coding downstream 3751 19115606 ~ 19120166 (-)
G101698 NA non-coding downstream 177098 18946479 ~ 18946819 (-)
G101692 NA non-coding downstream 218313 18905391 ~ 18905604 (-)
G101691 NA non-coding downstream 218593 18905006 ~ 18905324 (-)
G101686 NA non-coding downstream 255245 18868429 ~ 18868672 (-)
G101750 NA non-coding upstream 1198 19126638 ~ 19127359 (-)
G101805 NA non-coding upstream 114731 19240171 ~ 19241149 (-)
G101809 NA non-coding upstream 127413 19252853 ~ 19253363 (-)
G101846 NA non-coding upstream 173451 19298891 ~ 19299362 (-)
LOC113527011 NA non-coding upstream 225322 19350762 ~ 19350943 (-)
G101178 NA other downstream 927111 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 3766354 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 4776909 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 5561343 13550680 ~ 13562574 (-)
G98770 NA other downstream 6071606 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 854629 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 1270426 20395866 ~ 20416574 (-)
G102566 NA other upstream 1828162 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 1869901 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 3106008 22231448 ~ 22306769 (-)

Expression


Co-expression Network