G101846


Basic Information

Item Value
gene id G101846
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19298891 ~ 19299362 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU120553
AGGGATCTCCTTTGCACAGCACTcgagtcattccacaggttttcgataggatttagatctgggctctgactggccattccaaaatattgatcttcttcttctaaagcCCTtcttcctttgttgacttggatttgtgctttgggtgaCTTTGGCAGGCTTGGATGGGTTTTTCCCCCATGAGAAATAGCTTCCATTTAGctaccctaccccatagcccagatatgtgaagattacaagagattgttgtcacatgcagggagtggcCAGTACATGCCAGATATTcttgcagctcctttaatgttgccatagttcttggcagcctccctgataagttttcgtCTTGTCCTTTCGTTAATTTTGGAGGGAATGTCTGTTCTTGGTATTGTCACtatggtgccccattttctccacttgatgatggccttcacactgTTCCATGGTATGAATCACTGATatctcttttttaaattct

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU120553 True 472 lncRNA 0.43 1 19298891 19299362

Neighbor

gene id symbol gene type direction distance location
znf710a znf710 coding downstream 557167 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 774665 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 1573571 17720545 ~ 17725320 (-)
alpk3a LOC108264806,LOC104964022 coding downstream 1820606 17422361 ~ 17478285 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 1990989 17088641 ~ 17307902 (-)
dhx34 dhx34 coding upstream 10526 19309888 ~ 19333430 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 107688 19407050 ~ 19496993 (-)
LOC113526513 cxcr5 coding upstream 751970 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 915780 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 1062968 20362330 ~ 20377332 (-)
G101809 NA non-coding downstream 45528 19252853 ~ 19253363 (-)
G101805 NA non-coding downstream 57742 19240171 ~ 19241149 (-)
G101750 NA non-coding downstream 171532 19126638 ~ 19127359 (-)
G101749 NA non-coding downstream 173451 19123917 ~ 19125440 (-)
G101745 NA non-coding downstream 178725 19115606 ~ 19120166 (-)
LOC113527011 NA non-coding upstream 51400 19350762 ~ 19350943 (-)
G101865 NA non-coding upstream 61430 19360792 ~ 19361008 (-)
LOC113526920 NA non-coding upstream 63210 19362572 ~ 19363809 (-)
G101932 NA non-coding upstream 95709 19395071 ~ 19395304 (-)
G101938 NA non-coding upstream 191167 19490529 ~ 19491255 (-)
G101178 NA other downstream 1102085 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 3941328 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 4951883 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 5736317 13550680 ~ 13562574 (-)
G98770 NA other downstream 6246580 13045823 ~ 13052311 (-)
LOC113527007 NA other upstream 680707 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 1096504 20395866 ~ 20416574 (-)
G102566 NA other upstream 1654240 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 1695979 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 2932086 22231448 ~ 22306769 (-)

Expression


Co-expression Network